Topic: linkml Goto Github
Some thing interesting about linkml
Some thing interesting about linkml
linkml,Schema repository for the Alliance of Genome Resources persistent data store
Organization: alliance-genome
Home Page: https://alliance-genome.github.io/agr_curation_schema/
linkml,Schema for configurations / stylesheets for visualizing ontology and KGs
Organization: berkeleybop
Home Page: https://berkeleybop.github.io/kgviz-model/
linkml,LinkML schema for GFF3, the Genome Feature Format
Organization: biodatamodels
Home Page: https://biodatamodels.github.io/gff-schema/
linkml,schema for ontology associations
Organization: biodatamodels
Home Page: http://biodatamodels.github.io/ontology-associations
linkml,Schema and generated objects for biolink data model and upper ontology
Organization: biolink
Home Page: https://biolink.github.io/biolink-model/
linkml,LinkML rendering of model cards
Organization: bridge2ai
Home Page: https://bridge2ai.github.io/model-card-schema/
linkml,CRDC-H model in LinkML, developed by the Center for Cancer Data Harmonization (CCDH)
Organization: cancerdhc
Home Page: https://cancerdhc.github.io/ccdhmodel/
linkml,Roassal bindings for linked data models
User: capsulecorplab
linkml,A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 and Monkeypox sampling data. This project, created by the Centre for Infectious Disease Genomics and One Health (CIDGOH), at Simon Fraser University, is now an open-source collaboration with contributions from the National Microbiome Data Collaborative (NMDC), the LinkML development team, and others.
Organization: cidgoh
linkml,Python library for denormalizing nested dicts or json objects to tables and back
User: cmungall
linkml,EXPERIMENTAL rendering of phenopackets in linkml
User: cmungall
Home Page: https://cmungall.github.io/linkml-phenopackets/
linkml,Minimal Information About a New Cell Type
User: cmungall
Home Page: https://cmungall.github.io/mianct-schema/
linkml,A knowledge extraction tool that uses a large language model to extract semantic information from text
User: cmungall
Home Page: https://cmungall.github.io/semantic-llama/
linkml,Metadata schema for the German Human Genome-Phenome Archive (GHGA)
Organization: ghga-de
linkml,Datamodel for KGCL (Knowledge Graph Change Language)
Organization: incatools
Home Page: https://w3id.org/kgcl/
linkml,Tools for working with KGCL
Organization: incatools
linkml,SQL and SQLite builds of OWL ontologies
Organization: incatools
Home Page: https://incatools.github.io/semantic-sql/
linkml,Collation of metadata examples and notes for the project
Organization: isamplesorg
Home Page: https://isamplesorg.github.io/metadata/
linkml,Linked Open Data Modeling Language
Organization: linkml
Home Page: https://linkml.io/linkml
linkml,Support for loading and dumping N-dimensional arrays in LinkML.
Organization: linkml
Home Page: https://linkml.github.io/linkml-arrays
linkml,ALPHA common modeling patterns
Organization: linkml
Home Page: https://linkml.io/linkml-common
linkml,Translates LinkML schemas into Datalog programs and executes them using Souffle, enabling advanced validation and inference over instance data. ALPHA.
Organization: linkml
Home Page: https://linkml.io/linkml-datalog
linkml,Data API for LinkML instance data
Organization: linkml
linkml,Mapping between LinkML schemas
Organization: linkml
Home Page: https://linkml.io/linkml-map/
linkml,Link Modeling Language (LinkML) model
Organization: linkml
Home Page: https://linkml.github.io/linkml-model/docs/
linkml,Extension of LinkML runtime for converting instances of LinkML classes to OWL (classes or instances)
Organization: linkml
Home Page: https://linkml.io/linkml-owl
linkml,A template for LinkML projects using poetry and gen-project
Organization: linkml
linkml,Registry of schemas that use LinkML
Organization: linkml
Home Page: https://linkml.github.io/linkml-registry/registry/
linkml,Runtime support for linkml generated models
Organization: linkml
Home Page: https://linkml.io/linkml/
linkml,An implementation of the linkml-runtime in javascript ALPHA VERSION
Organization: linkml
linkml,wrapper for multiple linkml storage engines (alpha software)
Organization: linkml
Home Page: https://linkml.io/linkml-store
linkml,
Organization: linkml
Home Page: https://linkml.github.io/linkml-tutorial/
linkml,Semantic prefix map registry
Organization: linkml
Home Page: https://linkml.io/prefixmaps/
linkml,Automated assistance for the schema development lifecycle
Organization: linkml
Home Page: https://linkml.io/schema-automator/
linkml,Structure your data in a FAIR way using google sheets or TSVs. These are then converted to LinkML, and from there other formats
Organization: linkml
Home Page: https://linkml.io/schemasheets/
linkml,Easy Domain Specific Languages for your Schemas
Organization: linkml
Home Page: https://linkml.io/semantic-dsl/
linkml,sparql templates for linkml (alpha)
Organization: linkml
Home Page: https://linkml.github.io/sparqlfun/home/
linkml,Simple Standard for Sharing Ontology Mappings
Organization: mapping-commons
Home Page: https://mapping-commons.github.io/sssom/
linkml,Python toolkit for SSSOM mapping format
Organization: mapping-commons
Home Page: https://mapping-commons.github.io/sssom-py/index.html#
linkml,National Microbiome Data Collaborative (NMDC) unified data model
Organization: microbiomedata
Home Page: https://microbiomedata.github.io/nmdc-schema/
linkml,NMDC Sample Annotator
Organization: microbiomedata
Home Page: https://microbiomedata.github.io/sample-annotator/static/intro.html
linkml,A format for language profiles for ontologies
Organization: monarch-initiative
Home Page: https://monarch-initiative.github.io/babelon/
linkml,Data transformation framework for LinkML data models
Organization: monarch-initiative
Home Page: https://koza.monarchinitiative.org/
linkml,Data ingest application for Monarch Initiative knowledge graph using Koza
Organization: monarch-initiative
Home Page: https://monarchinitiative.org
linkml,Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species
Organization: monarch-initiative
Home Page: http://monarch-initiative.github.io/monochrom/
linkml,LLM-based ontological extraction tools, including SPIRES
Organization: monarch-initiative
Home Page: https://monarch-initiative.github.io/ontogpt/
linkml,The Terminology Code Index Entry model
Organization: timsbiomed
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