incatools Goto Github PK

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biosample-analysis

analysis of biosamples in INSDC

boomer

Bayesian OWL ontology merging

dataharmonizer

A standardized browser-based spreadsheet editor and validator that can be run offline and locally, and which includes templates for SARS-CoV-2 sampling data.

dead_simple_owl_design_patterns

A simple system for specifying OWL class design patterns for OBO-ish ontologies.

dosdp-tools

Utility for working with DOSDP design patterns and OWL ontologies

environments2wikidata

Mapping of GAZ and ENVO to Wikidata

fantom5-ontology

ontology categorizing samples from FANTOM5 project

figtools

Scala toolkit for analyzing figshare figures

figureidentifier

incatools.github.io

A site for publishing public facing documentation for INCATools

intelligent-concept-assistant

kgcl

Datamodel for KGCL (Knowledge Graph Change Language)

kgcl-rdflib

Tools for working with KGCL

neoplasmer

Neoplasm Entity Recognition: matching disease names to ontology classes

oakx-grape

Experimental OAK plugin for Grape

oakx-plugin-cookiecutter

cookiecutter for OAK plugins

oakx-robot

robot plugin for OAK

obo-shapes

SHACL and ShEx shapes for validating OBO ontologies

obographviz

Customizable translation of OBO graphs to dot for visualization using graphviz and other tools

ontobot-change-agent

A GitHub bot for modifying ontology resources.

ontology-access-kit

Ontology Access Kit: A python library and command line application for working with ontologies

ontology-development-kit

Bootstrap an OBO Library ontology

ontology-term-usage

determines how an ontology term has been used

owl_patternizer

generate DOSDP patterns from OWL ontologies

pandasaurus

Supporting simple queries over ontology annotations in dataframes, using UberGraph queries

pandasaurus_cxg

Ontology enrichment tool for CxG standard AnnData files

rdf-sql-bulkloader

rdf_matcher

swi rdf_matcher

relation-graph

Materialize OWL existential relations