Topic: hiv Goto Github
Some thing interesting about hiv
Some thing interesting about hiv
hiv,The Visualization Multitool for Molecular Epidemiology and Bioinformatics
User: aaboyles
Home Page: https://aaboyles.github.io/MicrobeTrace/
hiv,Software for inferring the intrinsic fitness landscape of poliovirus capsid protein (vp1) and comparing it with that of analogous proteins in HIV
User: ahmedaq
hiv,Software for identifying co-evolutionary sectors in proteins using RoCA
User: ahmedaq
hiv,RocaSec: A standalone GUI-based package for robust co-evolutionary analysis of proteins
User: ahmedaq
hiv,Point of care system for AMPATH clinics
Organization: ampath
hiv,Super LeArner Predictions using NAb Panels
User: benkeser
Home Page: https://benkeser.github.io/slapnap/
hiv,(P.I. Max Essex) Botswana Combination Prevention Project
Organization: botswana-harvard
hiv,V-pipe is a pipeline designed for analysing NGS data of short viral genomes
Organization: cbg-ethz
Home Page: https://cbg-ethz.github.io/V-pipe/
hiv,Codes for the identification of HIV predictors by Machine Learning Techniques.
User: charlesmutai
hiv,The classification, structure and replication cycle of HIV, its effect on the infected host cell (Helper T-cell) and on the infected organism (AIDS).
User: chrisnajman
Home Page: https://chrisnajman.github.io/hiv/
hiv,A web platform providing accessibility to HIV NGS pipelines - Template Consensus Sequence, Drug Resistance, Outgrowth Virus Dating
User: clarkmu
Home Page: https://primer-id.org
hiv,Viral Load Sample Management - Machine Interfacing
Organization: deforay
hiv,Network Models of HIV Transmission Dynamics among MSM and Heterosexuals
Organization: epimodel
hiv,Current development version of EvoNetHIV package
Organization: evonethiv
hiv,Clinical Trial Risk Tool for analysing clinical trial protocols using natural language processing and assessing the risk of ending uninformatively, developed by Fast Data Science
Organization: fastdatascience
Home Page: https://fastdatascience.com/clinical-trial-risk-tool/
hiv,Reconstruction and analysis of the HIV outbreak in Scott County, Indiana
User: fcrawford
hiv,Scripts and outputs for the paper "Signature changes in gut microbiome are associated with increased susceptibility to HIV-1 infection in MSM"
User: frederickhuanglin
hiv,Scripts and outputs for the paper "High risk sexual behavior is linked to changes in gut microbiome and systemic inflammation that lead to HIV-1 infection in men who have sex with men"
User: frederickhuanglin
hiv,High accuracy single molecule Nanopore reads using the MrHAMER pipeline
User: gallardo-seq
Home Page: https://doi.org/10.1093/nar/gkab231
hiv,The diversity of RNA structural elements and their documented role in human diseases make RNA an attractive therapeutic target. However, progress in drug discovery and development has been hindered by challenges in the determination of high-resolution RNA structures and a limited understanding of the parameters that drive RNA recognition by small molecules, including a lack of validated quantitative structure-activity relationships (QSAR). Herein, we developed QSAR models that quantitatively predict both thermodynamic and kinetic-based binding parameters of small molecules and the HIV-1 TAR model system. Small molecules bearing diverse scaffolds was screened against the HIV-1 TAR using surface plasmon resonance. Then multiple linear regression (MLR) combined with feature selection was performed to afford robust models that allowed direct interpretation of properties critical for both binding strength and kinetic rate constants. These models were externally validated with new molecules and their accurate performance confirmed via comparison to ensemble tree methods.
User: hargrove-lab
hiv,FASTQ-to-CodFreq pipeline for HIV-1 and SARS-CoV-2
Organization: hivdb
hiv,ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data
Organization: hku-bal
hiv,🦠Course project in Bioinformatics Institute 2023-2024
User: iliapopov17
hiv,Tutorial materials as referenced in IDM's documentation for EMOD, an agent-based disease dynamics model.
Organization: institutefordiseasemodeling
Home Page: http://idmod.org/docs/general/tutorials.html
hiv,Source files for building the IDM EMOD disease transmission model.
Organization: institutefordiseasemodeling
hiv,Look at flows of where infections come from and go to, cross-referencing EMOD log files
Organization: institutefordiseasemodeling
hiv,R code for evaluating adult HIV incidence, health, & implementation outcomes for the first phase of the SEARCH Study (https://www.searchendaids.com/). Full statistical analysis plan available at https://arxiv.org/abs/1808.03231
User: laurabalzer
hiv,This repo contains the data and software used to run the analyses in the "Using machine learning and Big data to explore the drug resistance landscape in HIV"
User: lucblassel
Home Page: https://doi.org/10.1371/journal.pcbi.1008873
hiv,Functions and scripts used in a pipeline to find novel drug resistance associated mutations in HIV pol-RT
User: lucblassel
Home Page: https://research.pasteur.fr/fr/project/drm-hiv/
hiv,Retrospective HIV Cohort for Diabetes Research - Tanzania
Organization: mapitio
hiv,Prediction of HIV-associated neurocognitive disorder (HAND) status from HIV quasispecies features
User: masato-ogishi
hiv,Modeling the HIV, AIDS virus based off of the SIR model. Differential equations and attempt at time delays
Organization: math-308
hiv,Package for incidence estimation via recency assays with single time-point cross-sectional data collection
User: mbannick
Home Page: https://marlenabannick.com/XSRecency
hiv,scoping review of heterogeneity and mixing in dynamical models of HIV transmission [JK PhD]
Organization: mishra-lab
hiv,SEEPS: Sequence Evolution and Epidemiological Process Simulator
Organization: molevolepid
hiv,A toolkit for creating databases of viral integration sites in host genomes
Organization: mullinslab
Home Page: https://mullinslab.microbiol.washington.edu/isdb/
hiv,a platform for the collection, storage, retrieval, and analysis of experimental data for laboratory workflows
Organization: mullinslab
hiv,FAVITES (FrAmework for VIral Transmission and Evolution Simulation)
User: niemasd
hiv,Research compendium for Spatial analysis of TB notifications in Blantyre, Malawi
User: petermacp
Home Page: https://www.lstmed.ac.uk/about/people/dr-peter-macpherson
hiv,A repository for the Advanced Programming Tutorial that teaches you how to develop an interactive model using Shiny
Organization: r-hta-in-lmics
hiv,Incidence Estimation Tools
Organization: sacema
hiv,This repository will used to gather and distribute intelligence about the The AIDS-cure Genocide started by Gilead Sciences which includes the CIA's massacres of houses of worship.
Organization: sevenfalling
Home Page: https://github.com/sevenfalling
hiv,Understanding suppression of HIV in R
User: sineadmorris
hiv,I created various dashboards to ascertain (a)Prevalence of all forms of TB across various countries divided into 6 regions, (b)Distribution of mortality, (c) Evaluation of Mortality (d)Comorbidities with HIV
User: snigdha1008
hiv,HIV-64148, an integration of multiple long-read genome assemblers with a pipeline for analysis of HIV-1 genomic data from Oxford Nanopore Sequencing Technology or PacBio Real-Time (SMRT) Sequencing technology.
Organization: sttlab
hiv,Estimating the contribution of each step of the HIV cascade to new infections
Organization: the-kirby-institute
hiv,Code repository for the publication. Contains Monolix and Julia files used for parameter estimation and data analysis, respectively.
User: vembha
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