cbg-ethz Goto Github PK
Name: Computational Biology Group (CBG)
Type: Organization
Bio: Beerenwinkel Lab at ETH Zurich
Twitter: cbg_ethz
Location: Basel, Switzerland
Name: Computational Biology Group (CBG)
Type: Organization
Bio: Beerenwinkel Lab at ETH Zurich
Twitter: cbg_ethz
Location: Basel, Switzerland
Benchmarking data sets for haplotype reconstruction methods, sequenced with Illumina MiSeq, 454/Roche GSJunior, and Pacific Biosciences
Mutual information estimators and benchmark
BMix is a novel probabilistic method based on a constrained three-component mixture, which identifies high confidence T-to-C substitutions in PAR-CLIP data, and, based on these, reports putative RNA-protein cross-link sites.
Bayesian non-parametric clustering (BnpC) of binary data with missing values and uneven error rates
Network-based clustering
Used to track downloads of bioconda packages used by V-pipe, see: https://cbg-ethz.github.io/V-pipe/pipeline/
Computes a consensus sequence with wobbles, ambiguous bases, and in-frame insertions, from a NGS read alignment.
Fitness estimates of SARS-CoV-2 variants
Procedure used fro the surveillance of SARS-CoV-2 genomic variants in wastewater.
Computational method and analyses to study the clonality of circulating tumor cell clusters
Finding the causality in biological pathways
Workflow for the processsing of data from the DCV evolutionary experiments.
Computational demultiplexing of targeted single-cell sequencing (tapestri) data
Epistatic Nested Effects Models - https://doi.org/10.1371/journal.pcbi.1005496 - https://bioconductor.org/packages/epiNEM/
Computes higher-order interactions such as 2-way, 3-way,…, n-way interaction coordinates and some circuits in the n-locus case taking as input 2^n experimental measurements.
GeneAccord: An R package to detect patterns of mutual exclusivity and co-occurrence on the clone level in a cohort of cancer patients
Gene-Specific Phenotype EstimatoR
Network-Based Clustering of Pan-Cancer Data Accounting for Clinical Covariates
Snakemake pipeline to compare two H-CBN models
Viral quasispecies assembly via maximal clique finding. A method to reconstruct viral haplotypes and detect large insertions and deletions from NGS data.
IGB is a R script for computing individualized genetic barrier
Iterative and very sensitive Next-Generation Sequencing (NGS) sequence alignment software. Accounting for large deletions and removes indels, causing frame shifts. In addition, only specific regions can be considered.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.