Topic: gromacs Goto Github
Some thing interesting about gromacs
Some thing interesting about gromacs
gromacs,Fast estimation of ion-pairing for screening electrolytes
User: ajaymur91
gromacs,OFFICIAL: AnteChamber PYthon Parser interfacE
User: alanwilter
Home Page: https://alanwilter.github.io/acpype/
gromacs,List of molecules (small molecules, RNA, peptide, protein, enzymes, antibody, and PPIs) conformations and molecular dynamics (force fields) using generative artificial intelligence and deep learning
User: aspirincode
gromacs,Basic tutorial for running and analyzing a Gromacs MD simulation of AdK
Organization: becksteinlab
Home Page: https://AdKGromacsTutorial.readthedocs.org
gromacs,GromacsWrapper wraps system calls to GROMACS tools into thin Python classes (GROMACS 4.6.5 - 2024 supported).
Organization: becksteinlab
Home Page: https://gromacswrapper.readthedocs.org
gromacs,Calculation of water/solvent partition coefficients with Gromacs.
Organization: becksteinlab
Home Page: https://mdpow.readthedocs.io
gromacs,Quickly generate, start and analyze benchmarks for molecular dynamics simulations.
Organization: bio-phys
Home Page: https://mdbenchmark.org
gromacs,Google Colab notebooks for running molecular dynamics simulations with GROMACS
User: bioinfkaustin
gromacs,Collective variables library for molecular simulation and analysis programs
Organization: colvars
Home Page: http://colvars.github.io/
gromacs,Rust Wrapper around the GROMACS libxdrfile library. A low level api to read and write molecular trajectories in .xtc and .trr format.
User: dnlbauer
gromacs,Swarm-CG: Automatic Parametrization of Bonded Terms in MARTINI-based Coarse-Grained Models of Simple to Complex Molecules via Fuzzy Self-Tuning Particle Swarm Optimization
Organization: gmpavanlab
Home Page: https://pubs.acs.org/doi/10.1021/acsomega.0c05469
gromacs,Reactive MD pipeline for GROMACS using Kinetic Monte Carlo / Molecular Dynamics (KIMMDY)
Organization: graeter-group
Home Page: https://graeter-group.github.io/kimmdy/
gromacs,Repository of the gromacstutorials webpage
Organization: gromacstutorials
Home Page: https://gromacstutorials.github.io/
gromacs,Longbow is a tool for automating simulations on a remote HPC machine. Longbow is designed to mimic the normal way an application is run locally but allows simulations to be sent to powerful machines.
Organization: hecbiosim
Home Page: http://www.hecbiosim.ac.uk
gromacs,Gromacs to Lammps simulation converter
User: hernanchavezthielemann
gromacs,Force Distribution Analysis (FDA) for GROMACS
Organization: hits-mbm
gromacs,reactive MD python pipeline for GROMACS using Kinetic Monte Carlo / Molecular Dynamics (KIMMDY)
Organization: hits-mbm
gromacs,Generate coarse-grained molecular dynamics models from atomistic trajectories.
User: jag1g13
gromacs,This GitHub repo has folders required for setting up the Molecular Dynamics simulations, Metadynamics simulations, and a description of the post-processing codes that were used in the Patil et. al. PNAS 2021
User: kespatil
gromacs,This code adds custom-made amino acids to the GROMACS forcefield directory.
User: kimjc95
gromacs,PaCS-Toolkit: Optimized software utilities for PaCS-MD and following analysis
Organization: kitaolab
Home Page: https://kitaolab.github.io/PaCS-Toolkit/
gromacs,Web Platform made with Python and NextJS for automating GROMACS simulations
Organization: labioquim
Home Page: https://visualdynamics.fiocruz.br
gromacs,Database of hand-built OPLS-AA parameters and topologies for 464 molecules. Zip files contains parameter and topologies for OpenMM, Gromacs, NAMD, CHARMM, LAMMPS, TINKER, CNS/X-PLOR, Q, DESMOND, BOSS and MCPRO.
User: leelasd
Home Page: http://traken.chem.yale.edu/ligpargen/
gromacs,Package to perform minimum-distance distribution analyses of complex solute-solvent interactions
Organization: m3g
Home Page: https://m3g.github.io/ComplexMixtures.jl/
gromacs,a python package for the interfacial analysis of molecular simulations
User: marcello-sega
Home Page: https://marcello-sega.github.io/pytim/
gromacs,Python bindings for TNG file format
Organization: mdanalysis
Home Page: http://mdanalysis.org/pytng
gromacs,lindemann is a python package to calculate the Lindemann index of a lammps trajectory
User: n720720
gromacs,A project (and object) for storing, manipulating, and converting molecular mechanics data.
Organization: openforcefield
Home Page: https://docs.openforcefield.org/projects/interchange
gromacs,Conversion of coarsegrain to atomistic (complete rewrite of the original CG2AT)
User: owenvickery
gromacs,Full automation of relative protein-ligand binding free energy calculations in GROMACS
Organization: protocaller
Home Page: http://protocaller.readthedocs.io
gromacs,ε©η¨xvgηζηcsvζδ»ΆθΏθ‘η»εΎηθζ¬
User: qdcvd
gromacs,To analyze fluctuations in DNA or RNA structures in molecular dynamics trajectories.
User: rjdkmr
Home Page: http://do-x3dna.readthedocs.io
gromacs,Molecular Dynamics Simulation of Alanine Dipeptide and Dihedral Angle Analysis
User: sbrodehl
gromacs,GROMACS input files
User: simongravelle
Home Page: https://www.youtube.com/channel/UCLmK_9wpyLVpcP7BPgN6BIw?view_as=subscriber
gromacs,NMRforMD is a python script for the calculation of NMR relaxation time T1 and T2 from molecular dynamics trajectory file.
User: simongravelle
Home Page: https://nmrformd.readthedocs.io/
gromacs,Generate PEG topology for GROMACS and LAMMPS
User: simongravelle
gromacs,Software Suite for Advanced General Ensemble Simulations
Organization: ssagesproject
gromacs,A package for molecular dynamics analysis and parallel tempering in GROMACS
User: theavey
gromacs,Automated peptide simulation tool with gromacs, gromacswrapper, plumed
Organization: ur-whitelab
gromacs,gmx_MMPBSA is a new tool based on AMBER's MMPBSA.py aiming to perform end-state free energy calculations with GROMACS files.
User: valdes-tresanco-ms
Home Page: https://valdes-tresanco-ms.github.io/gmx_MMPBSA/
gromacs,The source of the votca-csg and xtp packages
Organization: votca
gromacs,A repository providing jupyter notebooks and simulation inputs that accompany the mini course Hands-on tutorials: Advanced sampling methods using GROMACS
User: wehs7661
Home Page: https://weitsehsu.com/course/advanced_sampling
gromacs,A repository for the development of data analysis tools for replica exchange molecular dynamics (REMD) simulations
User: wehs7661
gromacs,Modern Fortran toolkit for reading in and analyzing DCD simulation trajectories output from LAMMPS
User: wesbarnett
gromacs,C++ toolkit for use in reading in and analyzing Gromacs files
User: wesbarnett
gromacs,Modern Fortran toolkit for analyzing GROMACS simulations
User: wesbarnett
gromacs,Fork of library used in reading xtc files from GROMACS simulations
User: wesbarnett
gromacs,For the purpose of post progressing of MD carried by gromacs
User: zuttergutao
A declarative, efficient, and flexible JavaScript library for building user interfaces.
π Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. πππ
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google β€οΈ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.