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Type: Organization
asyncmd is a library to write concurrent code for setup, run and analysis of molecular dynamics simulations using pythons async/await synthax.
Binless weighted histogram analysis
GPU accelerating computing for Bayesian inference of electron microscopy images. BioEM is a publicly available software that enables the characterization of structural models with respect to individual electron microscopy images.
Tutorials for BioEM
BioEn - Bayesian Inference Of ENsembles
BioEn optimization
Bayesian inference of force fields
Cadishi: CAlculation of DIStance HIstograms
Capriqorn: CAlculation of P(R) and I(Q) Of macRomolecules in solutioN
Simulation parameters and results for lipid-mediated self-assembly of CNT membranes.
Build atomistic structures of carbon nanotubes with the possibility to add functional groups (OH, COOH, COO-) and assigns generalized Amber (GAFF) parameters to them.
Analysis tools for simulations of carbon nanotubes (CNTs) in lipid membranes modeled with the Lipid14 force field.
Generates Martini models for open carbon nanotubes to use with Gromacs.
Analysis tools for Martini simulations of a single carbon nanotube porin in a lipid membrane. Mostly also work for membrane proteins.
Coarse-grained simulations of biomolecular complexes
Estimate the self-diffusion coefficient of a trajectory with a Generalized Least Squares (GLS) optimization procedure.
Analyze experimental tracking data using a maximum likelihood estimator (MLE) to extract translational diffusion coefficients.
Extension for the interactions with DNA and RNA of our previously bulk-optimized force field parameters (https://doi.org/10.1063/1.5017694)
Optimized force field parameters for metal cations (Li+, Na+, K+, Cs+, Mg2+, Ca2+, Sr2+, and Ba2+) in combination with the TIP3P water model for all-atom MD simulations.
Analyze rupture force spectra from single-molecule force spectroscopy experiments to extract disassociation rates and parameters characterizing the free-energy profile underlying the bond.
Grow ensembles of disordered biomolecules from fragment libraries
Statistical tests to detect and quantify correlations in residuals when fitting models to one-dimensional data.
Extracting kinetics from replica exchange molecular dynamics and related methods that produce discontinuous trajectories.
Optimized force field parameters for Magnesium in combination with the TIP3P water model for all-atom MD simulations.
Quickly generate, start and analyze benchmarks for molecular dynamics simulations.
Software to characterize membrane shape and curvature
Implementation of corrections for diffusion coefficients in membrane simulations.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.