Old version repository about radiator HOT 3 CLOSED

Hi,
the versions and different commits are found on GitHub.
the different versions are also found on Zenodo.

depending on the function used, navigate to it and you'll see a history button.

The change was documented:
The output with 1 and 2 in structure, genepop, arlequin was updated to make it easier to know what was the nucleotide used.

Before with the 1 and 2

• 1 and 2 was used for the 2 observed alleles in biallelic dataset...
• to know which nucleotide the1 and 2 meant you had to check with the REF and ALT allele in the VCF

Now with 1234

• is for the nucleotide: A, C, G, T
• for biallelic dataset, you will still have only 2 numbers.
• e.g. your genotype for biallelic marker A and id 1 is 001004: you know that the 2 alleles are A and T.

What's your input file ? A vcf ?
Do you still have the tidy data set?

Best
Thierry

from radiator.

reopen the issue if you're still having problems

from radiator.

Hi Thierry,
Sorry for the answer delayed. Thank you so much for your support.
I was thinking about the 1234 format and I agree with you, and it's too much more informative.
I've worried about how some packages behavior with this format, but now I had the same results for both formats (it's not a surprise - but these genomic analyses are still brand new to me).

Thanks again,

Cheers,
Miquéias

from radiator.