ERROR with detect_duplicate_genome + tidy format obtained from genomic_converter about radiator HOT 3 CLOSED

@GabryS3
Sorry for the long delay

First of all, did I needed to include a "STRATA" file? I did not include any. My genlight object was obtained through the package dartR.

I haven't used dartR in a long long time and no longer sure if it stores the population map or stratification (STRATA) for individuals. The file is not required because certain format stores the info. If not found it will make the assumption that you have just one population

from radiator.

@GabryS3
GT_BIN format
What is the GT_BIN & How is it coded? Is this genotype coding transformation reported above correct? From my understanding, it seems that GT_BIN codes the genotype in an opposite way compared to the genlight object, correct?

It will probably be change for another name very soon. For bi-allelic dataset it's the dosage of the alternate allele (the number of alternate allele).

I cannot be certain of your problem without a thorough look at your file.

from radiator.

Question 2 - error in "detect_duplcate_genomes()"

I'm unable to reproduce or help you with your problem without the files

Re-open the issue if it's still relevant to you
Best

from radiator.