Comments (1)
@imaa9 using a tsv file to produce a VCF and/or GENIND file for adegenet won't work.
Try using the VCF file produced by the same stacks run and use that instead as input with the strata file. This will work to generate a genind file.
from radiator.
Related Issues (20)
- Genomic converter error 'no more individuals in your data' HOT 9
- Error in file(con, "r") : cannot open the connection HOT 1
- Error when using genomic_converter genlight --> pcadapt HOT 3
- Potential help error with DArT HOT 3
- The GDS node "$ref" does not exist. HOT 4
- genomic_converter errors HOT 5
- Error in `dplyr::mutate()` - No Variants Selected HOT 5
- Error Converting VCF to Genepop HOT 12
- read_vcf file access error with parallel.core = 1L argument HOT 3
- ERROR with detect_duplicate_genome + tidy format obtained from genomic_converter HOT 3
- Error with genomic_converter HOT 2
- Help with bayescan 2.1 installation on linux system HOT 1
- genomic_converter:bed -> genind. strata HOT 2
- error Sexy_markers operator is invalid for atomic vectors HOT 2
- Error in "generate_id_stats" HOT 1
- genlight.R script does not work with current version of R HOT 7
- DArT Counts Error: filter_rad (MARKERS %in% markers) HOT 6
- sexy_markers operator is invalid for atomic vectors and Read Depth HOT 8
- Error in .DynamicClusterCall(cl, length(cl), .fun = function(.proc_idx HOT 23
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from radiator.