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thierrygosselin avatar thierrygosselin commented on May 26, 2024

Could you try again with latest release and tell me if you're still getting the problem.
If you do, send me the data, so that I can reproduce the problem and fix it

Best

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dani-davenport avatar dani-davenport commented on May 26, 2024

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thierrygosselin avatar thierrygosselin commented on May 26, 2024

Hi Dani,
Can you send me the DArT file + strata file and command you used so that I can reproduce the problem.
Best

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thierrygosselin avatar thierrygosselin commented on May 26, 2024

Make sure that you read the new doc...
TARGET_ID error suggest that you don't have this column in the strata file.
This is the unique id given by DArT.
Not sure ? Use the function extract_dart_target_id
This will help you to create the strata file.

strata file:
A tab delimited file with 3 columns. Columns header is:
TARGET_ID, INDIVIDUALS and STRATA.
Note: the columnSTRATA refers to any grouping of individuals.
You need to make sure that
the column TARGET_ID match the id used by DArT.
The column INDIVIDUALS and STRATA will be kept in the tidy data.
Only individuals in the strata file are kept in the tidy, i.e. that the strata
is also used as a whitelist of individuals/strata.

It's probably this that changed since you last used filter_dart.

Why these changes?
To accommodate more DArT files that were presented to me and make sure that the tidying process is made correctly.

Please re-open the issue if this doesn't fix your problem

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dani-davenport avatar dani-davenport commented on May 26, 2024

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dani-davenport avatar dani-davenport commented on May 26, 2024

from radiator.

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