snewhouse Goto Github PK

bowfast

run bowtie then bfast on colorspace reads.

bqplot

Plotting library for IPython/Jupyter Notebooks

brc-bioinformatics-eccb-2014

Abstracts presented at ECCB 2014

brc_mh_bioinformatics

Collection of pipelines, workflows and scripts for processing SNP and gene expression arrays and NGS data

broom

Convert statistical analysis objects from R into tidy format

busybox

Busybox container with glibc+opkg

caw

Cancer Analysis Workflow: a complete open source pipeline to detect somatic variants from WGS data

cemitool

Co-Expression Module Identification Tool (CEMiTool) official repository

cognition-dnc

Cognition-DNC (Dynamic Name Concealer) is a database processing tool to convert common office documents and plain text in a relational database into XHTML markup, and optionally mask strong person identifiers. It is designed with distributed computing frameworks in mind.

command_line_bootcamp

:computer: command-line bootcamp adventure in your browser

computational-genome-analysis

Website for Computational Exome and Genome Analysis

conda

my collection of conda builds : https://anaconda.org/sjnewhouse/

connect

The swiss army knife of healthcare integration.

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

courses

Course materials for the Data Science Specialization: https://www.coursera.org/specialization/jhudatascience/1

coverage

RGASP3 coverage statistics pipeline

crossmeta

cv-public

CV

data-analysis

Data Science Using Python

data-cleaning-rmotr-freecodecamp

data-science-at-the-command-line

Data Science at the Command Line

datasci_course_materials

Public repository for course materials for the Data Science at Scale Specialization at Coursera

datasciencecoursera

sjn data science coursera

datasharing

The Leek group guide to data sharing

davrods

An Apache WebDAV interface to iRODS

dcgan-tensorflow

A Tensorflow implementation of Deep Convolutional Generative Adversarial Networks on Fashion MNIST, CIFAR10, etc.

deeplearningtutorials

Deep Learning Tutorial notes and code. See the wiki for more info.

delly

DELLY: Structural variant discovery by integrated paired-end and split-read analysis

dev-setup

Mac OS X development environment setup: Easy-to-understand instructions with automated setup scripts for developer tools like Vim, Sublime Text, Bash, iTerm, Python data analysis, Spark, Hadoop MapReduce, AWS, Heroku, JavaScript web development, Android development, common data stores, and dev-based OS X defaults.

dna_seq