Comments (5)
linsalrob
commented on July 29, 2024
I think they are all the same issue, (perhaps curl is missing?)
Can you take a look in /mnt/pathogen1/stahan/hecatomb/.snakemake/log/2020-10-08T182453.577588.snakemake.log for line_sine_download and see if it gives you more information about the error
Additionally, what does curl --version return?
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nhatas
commented on July 29, 2024
curl --version returns curl 7.29.0 (x86_64-redhat-linux-gnu) libcurl/7.29.0 NSS/3.44 zlib/1.2.7 libidn/1.28 libssh2/1.8.0 Protocols: dict file ftp ftps gopher http https imap imaps ldap ldaps pop3 pop3s rtsp scp sftp smtp smtps telnet tftp Features: AsynchDNS GSS-Negotiate IDN IPv6 Largefile NTLM NTLM_WB SSL libz unix-sockets
I was able to fix the error in rule line_sine_download by installing seqtk to my environment.
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nhatas
commented on July 29, 2024
Fixed the issue by installing curl, cd-hit, mmseqs and seqtk to my environment.
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linsalrob
commented on July 29, 2024
Reopening ... Rob to add those to conda environment.
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shandley
commented on July 29, 2024
mostly irrelevant with newest version.
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Related Issues (20)
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