Comments (5)
mihinduk
commented on June 27, 2024
Here are some additional families (added to ICTV after the attached file was made).
Family Host
Adintoviridae Eukaryotes
Aliusviridae Insects
Crepuscuviridae Insects
Curvulaviridae Fungi
Guelinviridae Bacteria
Kolmioviridae Vertebrates icluding humans
Metaxyviridae Plants
Myriaviridae Arthropods
Natareviridae Arthropods
Simuloviridae Haloarchaea
Steitzviridae Bacteria
Zobellviridae Bacteria
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mihinduk
commented on June 27, 2024
I was thinking that the column should be called "Known_hosts" to emphasize that additional hosts could be discovered
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beardymcjohnface
commented on June 27, 2024
This is an excellent idea. For now it would be a simple table-join to incorporate this during analysis, and we could add this to the tutorial.
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beardymcjohnface
commented on June 27, 2024
do we want the host information in a more controlled format? I'm looking at some of the lines and it's not particularly ideal:
e.g.
Alphatetraviridae Insects: Butterflies, Moths
Caulimoviridae Plants, Insects
Do we want to be able to group say all the insect-host viral families (which would be a problem with the current format)?
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mihinduk
commented on June 27, 2024
Hi Mike,
I think that would be fine. I just copied what ViralZone had. I would think that we would always want to include humans as their own category and not collapse to mammals if there are other mammals.
Kathie
From: Michael Roach ***@***.***>
Date: Sunday, May 22, 2022 at 7:26 PM
To: shandley/hecatomb ***@***.***>
Cc: Mihindukulasuriya, Kathie ***@***.***>, Author ***@***.***>
Subject: Re: [shandley/hecatomb] Enhancement: Host (Issue #66)
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do we want the host information in a more controlled format? I'm looking at some of the lines and it's not particularly ideal:
e.g.
Alphatetraviridae Insects: Butterflies, Moths
Caulimoviridae Plants, Insects
Do we want to be able to group say all the insect-host viral families (which would be a problem with the current format)?
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