linsalrob Goto Github PK

acacia-stream

testing some streaming using minimap and acacia and something

adapt

ADAPT presents a web-based system for the analysis of ARISA data sets

adapter_benchmark

Benchmarking adapter and quality trimming tools

alphafold

Open source code for AlphaFold.

atavide

Atavistic processing of metagenomics data.

atavide_lite

A simpler version of atavide that relies only on slurm or PBS scripts. Some of the settings maybe specific for our compute resources

atlassensors

augur

An augur was a priest and official in the classical Roman world. His main role was the practice of augury: Interpreting the will of the gods by studying the flight of birds – whether they were flying in groups or alone, what noises they made as they flew, direction of flight, and what kind of birds they were

bam_scripts

Tools for (1) retrieving data from the Sequence Read Archive, (2) using Read Mapping for analysis, and (3) performing many common tasks when working with BAM/SAM files.

bangers

Convert protein sequences to DNA sequences to make them compatible with mash

bioconda-recipes

Conda recipes for the bioconda channel.

bioinformatics

Robs General Bioinformatics Repo.... Free code for all to use

bulk_rnaseq

Bulk RNA-seq & Differential Gene Expression Analysis Workshop Material

cameragui

A repository for the Prosilica Camera GUI

cat

CAT/BAT: tool for taxonomic classification of contigs and metagenome-assembled genomes (MAGs)

ceeqlib

Ceeqlib (pronounced seq-lib) is a library written in C for manipulating fastq and fasta files.

commonworkflowlanguage

CWL codes and examples for searchSRA.org

comparereferences

Compare References from Google Scholar and ORCID

computationalgenomicsmanual

Robs manual for the computational genomics and bioinformatics class.

computing-metagenomes-in-the-sra

A repository of code and examples that are associated with computing against metagenomes in the SRA

concoct

Clustering cONtigs with COverage and ComposiTion

coralimageanalysis

A central repo for all the coral image analysis code generated by the Edwards bioinformatics lab at San Diego State University

crapy

Cross-assembly in Python

crassphage

Sequencing and analysis of crAssphage regions from around the globe

crassphage_papers

A list of papers and publications related to crAssphage

depth-profile-video-processing

Video processing tools for analyzing the depth profiles from Line Islands (and other coral reefs?) transects

edirectcookbook

edwards-opensocial

Automatically exported from code.google.com/p/edwards-opensocial

edwardslab

Code from the Edwards lab, including bioinformatics, image analysis and more. All this code is created and maintained by folks at Rob Edwards' bioinformatics lab at Flinders University

edwardslab-android

Automatically exported from code.google.com/p/edwardslab-android