Comments (4)
flying-sheep
commented on June 11, 2024
why wait? is there anything blocking doing that right now?
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ivirshup
commented on June 11, 2024
It requires all open PRs to do something, and we are going to have to wait for at least one round of CI after we do this.
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flying-sheep
commented on June 11, 2024
no it doesn’t, they get automatically switched. The CI think is true though.
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ivirshup
commented on June 11, 2024
Done, but people with existing clones will need to run:
git branch -m master main
git fetch origin
git branch -u origin/main main
git remote set-head origin -a
I'm going to pin this for a bit to make it more visible
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Related Issues (20)
- Unify `method`/`flavor`/`backend`/… parameters
- Parameter docs render text in backticks as `<cite/>` text HOT 1
- Unable to plot embedding after Scanpy release 1.9.7 HOT 4
- pytest 8 compatibility HOT 2
- Fix plotting warnings raised in tutorial notebooks HOT 2
- Violin plots in Preprocessing and clustering 3k PBMCs tutorial HOT 4
- Documentation for percent_top= in scanpy.pp.calculate_qc_metrics is unclear and contradictory HOT 4
- Use of fast_matrix_market library to read mtx files HOT 1
- ValueError: b'Extrapolation not allowed with blending' when using `"sc.pp.highly_variable_genes"` function HOT 3
- sc.pp.subsample, allow for sampling with replacement HOT 1
- String conversion of `qc_vars` into a `Collection` when a `str` input is provided in `calculate_qc_metrics`
- ``biomart_annotations`` still creates cache when ``use_cache=False`` HOT 2
- Submodular optimization using apricot HOT 2
- Change default leiden clustering backend to `igraph`, and reduce default number of iterations
- Scanorama causing segfault on CI HOT 1
- More in depth example for `neighbors(transformer=...)` HOT 1
- scanpy 1.10.0rc1 breaks anndata pre-release tests
- log1p return matrix HOT 1
- Leiden and louvain params not saved to matching `key_added` key in `uns` dictionary
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