Comments (1)
Done in #2903 and scverse/scanpy-tutorials#87
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Related Issues (20)
- Benchmarks: Add all from Dask tutorial
- sc.pp.neighbors(..., knn=True, n_neighbors=k) does not threshold the adjacency
- Different clustering results when setting metrics = "cosine", using callable cosine function and direct cos distance input.
- sc.pl.paga_path error in dimensions of array passed to ax.imshow
- AttributeError: module 'scanpy.preprocessing' has no attribute 'scrublet' HOT 2
- Unexplainable sc.pp.highly_variable_genes(subset = True) behavior HOT 1
- sc.tl.leiden with `flavor='igraph'` raises an (ignored by igraph) “ValueError: high is out of bounds for int32” HOT 6
- When importing Scanpy 1.9.1, if you're using matplotlib version below 3.7, you might encounter a metaclass error. HOT 5
- Loophole with using scaled adata for sc.tl.score_genes_cell_cycle
- will rank_genes_groups_dotplot support results from filter_rank_genes_groups? HOT 4
- More complete dataset documentation HOT 2
- Switch away from asv HOT 1
- Access to Diffusion Map methods (and other embedding methods) as Scikit-Learn style API HOT 2
- Wrongly ordered DotPlot totals in `scanpy` 1.10.1 with Pandas 1.x HOT 3
- sc.get.aggregate summary statistics
- Broken Scrublet Test
- Error in running scrublet HOT 1
- error in readwrite.py HOT 1
- Adata.raw gets modified upon log normalization of adata HOT 1
- AttributeError: 'Ingest' object has no attribute '_pca_use_hvg'
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from scanpy.