Comments (2)
flying-sheep
commented on June 2, 2024
Same way as in anndata: We use an autouse fixture and directly execute the effects instead of adding marks.
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flying-sheep
commented on June 2, 2024
OK, that’s weird: Now there’s a bunch of ImageComparisonFailures in the minimal tests job. are they unrelated? A fluke?
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Related Issues (20)
- Unify `method`/`flavor`/`backend`/… parameters
- Parameter docs render text in backticks as `<cite/>` text HOT 1
- Unable to plot embedding after Scanpy release 1.9.7 HOT 4
- Fix plotting warnings raised in tutorial notebooks HOT 2
- Violin plots in Preprocessing and clustering 3k PBMCs tutorial HOT 4
- Documentation for percent_top= in scanpy.pp.calculate_qc_metrics is unclear and contradictory HOT 4
- Use of fast_matrix_market library to read mtx files HOT 1
- ValueError: b'Extrapolation not allowed with blending' when using `"sc.pp.highly_variable_genes"` function HOT 3
- sc.pp.subsample, allow for sampling with replacement HOT 1
- String conversion of `qc_vars` into a `Collection` when a `str` input is provided in `calculate_qc_metrics`
- ``biomart_annotations`` still creates cache when ``use_cache=False`` HOT 2
- Submodular optimization using apricot HOT 2
- Change default leiden clustering backend to `igraph`, and reduce default number of iterations
- Scanorama causing segfault on CI HOT 1
- Rename master -> main HOT 4
- More in depth example for `neighbors(transformer=...)` HOT 1
- scanpy 1.10.0rc1 breaks anndata pre-release tests
- log1p return matrix HOT 1
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