rcedgar / newick Goto Github PK

I have this error message when using relabel command :

---Fatal error---
Missing input file name

I used the following files in the command:

newick -relabel NP_214621.nwk.txt -labels labels.txt -output NP_214621_tb2.nwk

NP_214621.nwk.txt
labels.txt

Really appreciate your help. This software is very useful in my research. I really want to use this in my next step analysis. Looking forward to your reply.

Running the make command within cloned repo /src directory returns below error:

g++  -DNDEBUG -pthread  -O3 -fopenmp -ffast-math -msse -mfpmath=sse -c -o o/relabel.o relabel.cpp
relabel.cpp:2:10: fatal error: treeN.h: No such file or directory
    2 | #include "treeN.h"
      |          ^~~~~~~~~
compilation terminated.
make: *** [Makefile:154: o/relabel.o] Error 1

Granted, there's a binary available directly on the front page, but I'd love to be able to compile this myself for study's sake.
Copying the noted treen.h file into usr/include on my system doesn't seem to change anything.

My system is Ubuntu 22.04.3 LTS running system default g++

Thank you!

Hi,

I want to use the subtree command, but when I use the following command line:

newick -input NP_214621.nwk.txt -labels labels.txt -output NP_214621_subtree.nwk

it gives me this error message:

Invalid command line
Unknown option input

so I guess it might should be like this :

newick -subtree NP_214621.nwk.txt -labels labels.txt -output NP_214621_subtree.nwk

this time it gave me more information but still failed:

newick v1.0.1429_i86linux64, 16.3Gb RAM, 12 cores

newick 1.0.1429_i86linux64  16.3Gb RAM, 12 cores
(C) Copyright 2020-21 Robert C. Edgar, all rights reserved.
https://drive5.com



newick -subtree NP_214621.nwk.txt -labels labels.txt -output NP_214621_subtree.nwk
Elapsed time 00:00
Max memory 0.0b

---Fatal error---
Not implemented

Any idea what went wrong? Please kindly help me out.

Yang

newick -draw core.newick -svg test.svg
---Fatal error---
tree2.cpp(836) assert failed: IsRooted()