rcedgar / newick Goto Github PK
View Code? Open in Web Editor NEWManipulate and generate figures for trees in Newick format
License: GNU General Public License v3.0
Manipulate and generate figures for trees in Newick format
License: GNU General Public License v3.0
I have this error message when using relabel command :
---Fatal error---
Missing input file name
I used the following files in the command:
newick -relabel NP_214621.nwk.txt -labels labels.txt -output NP_214621_tb2.nwk
Really appreciate your help. This software is very useful in my research. I really want to use this in my next step analysis. Looking forward to your reply.
Running the make command within cloned repo /src directory returns below error:
g++ -DNDEBUG -pthread -O3 -fopenmp -ffast-math -msse -mfpmath=sse -c -o o/relabel.o relabel.cpp
relabel.cpp:2:10: fatal error: treeN.h: No such file or directory
2 | #include "treeN.h"
| ^~~~~~~~~
compilation terminated.
make: *** [Makefile:154: o/relabel.o] Error 1
Granted, there's a binary available directly on the front page, but I'd love to be able to compile this myself for study's sake.
Copying the noted treen.h file into usr/include on my system doesn't seem to change anything.
My system is Ubuntu 22.04.3 LTS running system default g++
Thank you!
Hi,
I want to use the subtree command, but when I use the following command line:
newick -input NP_214621.nwk.txt -labels labels.txt -output NP_214621_subtree.nwk
it gives me this error message:
Invalid command line
Unknown option input
so I guess it might should be like this :
newick -subtree NP_214621.nwk.txt -labels labels.txt -output NP_214621_subtree.nwk
this time it gave me more information but still failed:
newick v1.0.1429_i86linux64, 16.3Gb RAM, 12 cores
newick 1.0.1429_i86linux64 16.3Gb RAM, 12 cores
(C) Copyright 2020-21 Robert C. Edgar, all rights reserved.
https://drive5.com
newick -subtree NP_214621.nwk.txt -labels labels.txt -output NP_214621_subtree.nwk
Elapsed time 00:00
Max memory 0.0b
---Fatal error---
Not implemented
Any idea what went wrong? Please kindly help me out.
Yang
newick -draw core.newick -svg test.svg
---Fatal error---
tree2.cpp(836) assert failed: IsRooted()
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