(qiime2-2017.4) yovazquezbaeza:data-from-qiita$ qiime feature-table merge-seq-data --i-data1 3168-sequences.qza --i-data2 2388-sequences.qza --o-merged-data sequences.qza --verbose
Traceback (most recent call last):
File "/home/yovazquezbaeza/miniconda/envs/qiime2-2017.4/lib/python3.5/site-packages/q2cli/commands.py", line 218, in __call__
results = action(**arguments)
File "<decorator-gen-153>", line 2, in merge_seq_data
File "/home/yovazquezbaeza/miniconda/envs/qiime2-2017.4/lib/python3.5/site-packages/qiime2/sdk/action.py", line 168, in callable_wrapper
recorder)
File "/home/yovazquezbaeza/miniconda/envs/qiime2-2017.4/lib/python3.5/site-packages/qiime2/sdk/result.py", line 234, in _view
result = transformation(self._archiver.data_dir)
File "/home/yovazquezbaeza/miniconda/envs/qiime2-2017.4/lib/python3.5/site-packages/qiime2/core/transform.py", line 59, in transformation
new_view = transformer(view)
File "/home/yovazquezbaeza/miniconda/envs/qiime2-2017.4/lib/python3.5/site-packages/qiime2/core/transform.py", line 183, in wrapped
return transformer(view.file.view(self._wrapped_view_type))
File "/home/yovazquezbaeza/miniconda/envs/qiime2-2017.4/lib/python3.5/site-packages/q2_types/feature_data/_transformer.py", line 150, in _15
for sequence in _read_dna_fasta(str(ff)):
File "/home/yovazquezbaeza/miniconda/envs/qiime2-2017.4/lib/python3.5/site-packages/skbio/io/registry.py", line 506, in <genexpr>
return (x for x in itertools.chain([next(gen)], gen))
File "/home/yovazquezbaeza/miniconda/envs/qiime2-2017.4/lib/python3.5/site-packages/skbio/io/registry.py", line 531, in _read_gen
yield from reader(file, **kwargs)
File "/home/yovazquezbaeza/miniconda/envs/qiime2-2017.4/lib/python3.5/site-packages/skbio/io/registry.py", line 1008, in wrapped_reader
yield from reader_function(fhs[-1], **kwargs)
File "/home/yovazquezbaeza/miniconda/envs/qiime2-2017.4/lib/python3.5/site-packages/skbio/io/format/fasta.py", line 677, in _fasta_to_generator
**kwargs)
File "/home/yovazquezbaeza/miniconda/envs/qiime2-2017.4/lib/python3.5/site-packages/skbio/sequence/_grammared_sequence.py", line 338, in __init__
self._validate()
File "/home/yovazquezbaeza/miniconda/envs/qiime2-2017.4/lib/python3.5/site-packages/skbio/sequence/_grammared_sequence.py", line 362, in _validate
list(self.alphabet)))
ValueError: Invalid character in sequence: b'g'.
Valid characters: ['-', 'B', 'A', 'H', 'R', 'V', 'W', 'N', 'Y', 'M', 'K', 'G', 'C', '.', 'T', 'D', 'S']
Note: Use `lowercase` if your sequence contains lowercase characters not in the sequence's alphabet.
Plugin error from feature-table:
Invalid character in sequence: b'g'. Valid characters: ['-', 'B',
'A', 'H', 'R', 'V', 'W', 'N', 'Y', 'M', 'K', 'G', 'C', '.', 'T', 'D',
'S'] Note: Use `lowercase` if your sequence contains lowercase
characters not in the sequence's alphabet.
See above for debug info.