Comments (8)
tati-micheletti
commented on June 25, 2024
I like it!!! :)
perfict.projects
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eliotmcintire
commented on June 25, 2024
I think just `perfict` ... but that may be overselling... After all it
isn't doing all the parts of perfict ... what is it doing?
Depends on what is a) actually in this package and b) whether it is going
to expand its capabilities
If it is
…On Wed, 12 May 2021 at 14:02, Tati Micheletti ***@***.***> wrote:
I like it!!! :)
perfict.projects
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achubaty
commented on June 25, 2024
keeping as is for now because it is SpaDES-focussed atm. we can always reassess in the future.
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CeresBarros
commented on June 25, 2024
I'm not sure if I agree with @eliotmcintire and @tati-micheletti. The structure of the project setup feels quite spades-y (e.g. cache, modules, inputs and outputs folders). Would any king of project benefit from the same structure?
For instance a project could be so simple that it only has one script with a LM that needs small input data files and outputs. Meaning that e.g. the modules/ cache/ folders are not necessary.
So this project would simply be:
ProjName/
- inputs/
- LMscript.R
- outputs/
What I mean is a standard project setup massively depends on the workflows and toolkits used, even if they are all reproducible. It feels strange to me to say "our project setup is ubiquotously useful/applicable for any workflow and toolkit using R" when part of its structure comes from "SpaDES" needs (e.g. a modules/ folder)
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tati-micheletti
commented on June 25, 2024
Hummm. I think that a more complex structure works for simple projects, even if it feels "bulky" and "spades-y". Even simple projects might want to take advantages of the modular structure and caching, for example (so, modules and caching folders should be there). The other way around, however, is not true. So I think I stand behind the template proposed, even if for simple projects it feels like too much.
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CeresBarros
commented on June 25, 2024
I see what you mean Tati. I'll have to think a bit more about how someone would try to think about and implement "modules" without it meaning "SpaDES modules", and in a "simpler" way (i.e. without redoing something like a suite of packages and module standards that would be a duplicate of SpaDES) or using another R modelling standard (do we know of a SpaDES equivalent in R?). If this package becomes disassociated from SpaDES it may be good to come up with practical examples of how it's useful within and beyond the SpaDES world.
On 16 Sep 2022, at 23:38, Tati Micheletti ***@***.******@***.***>> wrote:
[CAUTION: Non-UBC Email]
Hummm. I think that a more complex structure works for simple projects, even if it feels "bulky" and "spades-y". Even simple projects might want to take advantages of the modular structure and caching, for example (so, modules and caching folders should be there). The other way around, however, is not true. So I think I stand behind the template proposed, even if for simple projects it feels like too much.
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tati-micheletti
commented on June 25, 2024
If this package becomes disassociated from SpaDES it may be good to come up with practical examples of how it's useful within and beyond the SpaDES world.
Yeap. That is a good point. I agree we should brainstorm this.
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eliotmcintire
commented on June 25, 2024
PERFECT had nothing to do with SpaDES, yet we spoke of reusable modules.
THese are groups of code, *and that are not just scripts*. But, I think a
modules folder would be ubiquitously useful.
packages
modules
cache
inputs
outputs
tmp
…On Sun, Sep 18, 2022 at 4:03 AM Tati Micheletti ***@***.***> wrote:
If this package becomes disassociated from SpaDES it may be good to come
up with practical examples of how it's useful within and beyond the SpaDES
world.
Yeap. That is a good point. I agree we should brainstorm this.
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Related Issues (20)
- allow user to disable gitignore update HOT 15
- reproducible.destinationPath not set when supplying inputPath to paths in setupProject HOT 11
- confusing message setting up params - SpaDES.core is installed HOT 7
- store previous libPaths in the object output by setupProject()
- checking absolute paths
- 2 different `data.table`-related errors HOT 6
- `setupSideEffects` and `setupOptions` have the same description HOT 1
- `setupProject` examples have an error? HOT 1
- `setupProject(..., Restart = TRUE)` creates RStudio project, but `setupProject(..., Restart = FALSE)` doesn't HOT 2
- strange output/behaviour when `setupProject(..., verbose = 2)` HOT 1
- Object missing from output of `setupProject`: partial matching issue? HOT 2
- `setupProject(..., sideEffects)` documentation seems circular and may ned more detail HOT 2
- separate `setupProject` documentation from `setupStudyArea` and other "inner" funtions
- setupProject is not finding the url although it can be opened in the browser HOT 1
- `Error in (function (nam) : argument "valObjName" is missing, with no default` HOT 2
- The main project is not being set up properly as a git repo when using `useGit="Sub"`. HOT 4
- Pkg installation issues HOT 2
- `tools::file_ext(modules)` returns "R" not ".R"
- `parseFileLists` can't find `defineModule()`/`defineParameter()` but they are there? HOT 3
- `setupModule` with GitHub .R file - errors are misleading and module ends up in "wrong place" HOT 2
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