This repository is meant for the participants of the BioHackathon hosted near Barcelona in November 2023 to share ideas, create issues, manage projects, publish materials, create code, etc.

• Project 1: A “batteries-included” open reference resource for human genomic copy number variants (CNV)
• Project 2: Assessing quality and privacy metrics of synthetic health data for benchmarking: the variant callers use case.
• Project 3: Automating the building of a virtual, distributed pollinator reference collection.
• Project 4: Benchmarks for Bioinformatics Workflow Bake Offs
• Project 5: BioHackrXiv and publications
• Project 6: BioModelsML: Building a FAIR and reproducible collection of machine learning models in life science and medicine for easy reuse
• Project 7: Bioschemas resource index for chem and plants
• Project 8: Building towards a machine-actionable Software Management Plan
• Project 9: Cell type-specific and druggable pathway models and maps
• Project 10: FAIR Workflow Execution with WfExS and Workflow Run Crate
• Project 11: Creating lesson plans to advance (life sciences) data steward & researcher FAIR skills
• Project 12: Creating the ELIXIR Data Stewardship/Management (DS/DM) Handbook - a guide for DS/DM to manage their life sciences RDM efforts
• Project 13: Discovering Bioinformatics Software in Software Heritage
• Project 14: Enabling continuous RDM using Annotated Research Contexts with RO-Crate profiles for ISA
• Project 15: Enabling FAIR Digital Objects with RO-Crates, Signposting and Bioschemas
• Project 16: Enhancing the image analysis community in Galaxy
• Project 17: Extending interoperability of experimental data using modular queries across biomedical resources
• Project 18: FAIRification of mass spectral library creation
• Project 19: Galaxy ENA Upload as an Interactive Tool
• Project 20: Genome annotation workflows for the tree of life
• Project 21: Health data text mining
• Project 22: Improved linking from sequence data to specimens and samples repositories
• Project 23: Improving Bioschemas creation and community adoption through process improvements and tool development, and advancing compliance to FAIR standards
• Project 24: Improving functionality and usability of OpenEBench for data-driven research in Life Sciences through Community-led efforts
• Project 25: Increasing the findability, visibility, and impact of Galaxy tools for specialised scientific Communities
• Project 26: Literature Biocuration Practices and Guidelines
• Project 27: Multi-Repository Data Submission using ISA-JSON
• Project 28: Providing a seamless and interoperable environment for executing life science workflows
• Project 29: Secure data-out API - enabling encrypted htsget transactions
• Project 30: Standards and ontologies for single cell experiments
• Project 31: Standards for a multimodal data wastewater surveillance process
• Project 32: Synergising ELIXIR Resources for Training in Systems Biology
• Project 33: The BioHackathon Cloud
• Project 34: Training SPLASH
• Project 35: Write once, run everywhere: exploring the use of Rust and WebAssembly to implement the Nanopublication signing protocol