Name: Magnus Palmblad
Type: User
Company: Leiden University Medical Center
Bio: Associate Professor and Head of Bioinformatics at the LUMC Center for Proteomics and Metabolomics
Twitter: magnuspalmblad
Location: Leiden, the Netherlands
š Iām currently working on a range of machine learning projects in proteomics, workflow composition and dedicated, stand-alone, tools such as SCOPE, compareMS2 and mzRecal.
š I irregularly write articles on https://magnuspalmblad.github.io/
š¬ Ask me about proteomics data analysis software
š« How to reach me [email protected]
addfeatures
addFeatures adds spot images to a SCiLS Lab dataset from a list of defined mass spectral features
averageregions
averageRegions averages the spectra in all or a defined subset of regions in a SCiLS Lab dataset and outputs this a Bruker-style .xy file.
biohackathon-projects-2024
Project code for BioHackathon Europe 2024.
bioinformatics-software-metadata-enhancement
chebi2plot
comparems2
compareMS2 provides a pairwise global comparison between LC-MS/MS datasets based on similarity between the tandem mass spectra. Applications include molecular phylogenetics, quality control, pathogen identification and food authentication.
cytoscape-app-samples
Cytoscape 3 sample code for App developers.
each
Semantic Annotation of Methods Sections in Analytical Chemistry
elixir-metadata-project
europepmc2chebi
KNIME workflow for extracting ChEBI annotations from a Europe PMC literature search
gitdemo
glyco
Semantic Annotation of Methods Sections in Glycomics and Glycoproteomics Papers
helloworld
ionmobility
Datasets for ion mobility prediction
magnuspalmblad
magnuspalmblad.github.io
:art: A ridiculously elegant Jekyll theme.
magnuspalmblad_blog
mzxml2stl
Coverter between mzXML and STL format, e.g. for 3D printing LC-MS data
ngp
This is a collection of single-molecule, next-generation proteomics (NGP) simulation and analysis algorithms.
psi-ms-cv
HUPO-PSI mass spectrometry CV
refactored-fastpass
FastPaSS is an GPU accerelated spectral library search tool. This version is a rewrite of the original code published by Baumgardner.
shic
shic is a collection of shims for use in automated workflow composition
synthetic-health-data-generator
wombat-pipelines
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
š Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
Django
The Web framework for perfectionists with deadlines.
Laravel
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ššš
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
Microsoft
Open source projects and samples from Microsoft.
Google
Google ā¤ļø Open Source for everyone.
Alibaba
Alibaba Open Source for everyone
D3
Data-Driven Documents codes.
Tencent
China tencent open source team.
