This is the supporting code and data for the manuscript: 'A probabilistic framework for decoding behavior from in vivo calcium imaging data' by Guillaume Etter, Frederic Manseau, and Sylvain Williams

Link to the publication: https://www.frontiersin.org/articles/10.3389/fncir.2020.00019/abstract

Link to the preprint repository: https://www.biorxiv.org/content/10.1101/827030v1

How to cite: Etter, G., Manseau, F. & Williams, S. A probabilistic framework for decoding behavior from in vivo calcium imaging data. Front. Neural Circuits 14, (2020).

Last update on: 2020/02/28

• extract_1D_information computes MI (instead of KLD), prior and posterior probability distributions
• Added bootstrapping in fig1
• Simplified fig5: confidence intervals are sufficient to estimate encoding predicition variability

COMING SOON:

• Python notebook version
• Functional implementation
• Generalization of the code for discrete states (instead of binning continuous states in the present form)