popkillerhehe Goto Github PK

almog-et-al.-matlab-code

Matlab code used in the paper by Almog et al. 2019

barcode

Code for barcode detection and strength tracking

bolkanstoneetal

code to analyze data/generate plots in Bolkan, Stone et al (2022)

buzcode

Code for internal lab sharing - polishing has started but is by no means complete

caimdecoding

Decoding behavior from calcium imaging data

cellsorter

Classification using UMAP and kmeans

class-decoding

Supervised and unsupervised techniques to decode signals from a population of neurons: the case of head-direction cells.

cmbhome

MATLAB Package for Neural Data

dabest-matlab

MATLAB package to generate contrast plots

data_analysis

deepinsight

A general framework for interpreting wide-band neural activity

deepinsight-1

A methodology to transform a non-image data to an image for convolution neural network architecture

dspca

Demixed subspace principal component analysis (dsPCA). This is a dimensionality reduction algorithm for high-dimensional data such as neural population activity.

elife_2015

fpa

Fiber photometry analysis

glmhmm

code to fit GLMs, HMMs, and GLM-HMMs (aka IO-HMMs)

glmspiketools

Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).

hippocampalreplay

hippocampus-replay

hmmlearn

Hidden Markov Models in Python, with scikit-learn like API

individualthetacluster

lfp_analysis

lw_template_correlation

A Matlab implementation of the moving-window template correlation method for detection of hippocampal replay during REM sleep, as used in Louie & Wilson 2001.

matlab

matlab-ibis

Collection of basics for working with behavioural data

measure_phaseprec

Library for quantification of hippocampal phase precession written by Richard Kempter

ms_sync_analysis

Code for analyzing synchrony between the medial septum and the hippocampus.

neural_decoding

A python package that includes many methods for decoding neural activity

neuraldata-w16

Analysis of Neural Data -- Dartmouth PBS graduate course

neuroalgo