Comments (1)
This problem is almost always caused due to an issue with how the exon and
junction files are named. AltAnalyze must match up each exon and junction file
that correspond to a single sample propperly, or this error will occur. An
example of a valid pair of files names is "patient1__exon.bed" and
"patient1__junction.bed". A bad example is "patient1_exon.bed" and
"patient1_junction.bed", where only one and not two underscores are used. The
text "exon" and "junction" here are not important (anything can be used
following the __ and AltAnalyze automatically detects exon versus junction
files based on the number of columns in the file). Rather, the identical sample
name preceeding the double underscore must be present. In the next version of
AltAnalyze (versoin 2.0.8), this problem will be caught before the analysis is
run.
Original comment by [email protected]
on 15 Jan 2014 at 3:10
- Changed state: Fixed
from altanalyze.
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