Comments (4)
from altanalyze.
I am just trying to find a GUI way to analyse a RNASeq expression matrix. Simple stuff, but a GUI is what Im trying.
USing anaconda and a python2.7 environment I get the following error:
Building wheel for llvmlite (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /home/premsubramaniam/anaconda3/envs/py2/bin/python2.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4MrhFR/llvmlite/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4MrhFR/llvmlite/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-0T9ZkF
cwd: /tmp/pip-install-4MrhFR/llvmlite/
Complete output (7 lines):
running bdist_wheel
/home/premsubramaniam/anaconda3/envs/py2/bin/python2.7 /tmp/pip-install-4MrhFR/llvmlite/ffi/build.py
File "/tmp/pip-install-4MrhFR/llvmlite/ffi/build.py", line 122
raise ValueError(msg.format(_ver_check_skip)) from e
^
SyntaxError: invalid syntax
error: command '/home/premsubramaniam/anaconda3/envs/py2/bin/python2.7' failed with exit status 1
----------------------------------------
ERROR: Failed building wheel for llvmlite
Running setup.py clean for llvmlite
Failed to build llvmlite
ERROR: pynndescent 0.5.6 has requirement numba>=0.51.2, but you'll have numba 0.44.0 which is incompatible.
ERROR: umap-learn 0.5.2 has requirement numba>=0.49, but you'll have numba 0.44.0 which is incompatible.
ERROR: umap-learn 0.5.2 has requirement numpy>=1.17, but you'll have numpy 1.16.6 which is incompatible.
ERROR: umap-learn 0.5.2 has requirement scikit-learn>=0.22, but you'll have scikit-learn 0.20.4 which is incompatible.
Installing collected packages: llvmlite, enum34, numba, pynndescent, typing, scandir, pathlib2, contextlib2, zipp, importlib-resources, tqdm, umap-learn, altanalyze
Running setup.py install for llvmlite ... error
ERROR: Command errored out with exit status 1:
command: /home/premsubramaniam/anaconda3/envs/py2/bin/python2.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4MrhFR/llvmlite/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4MrhFR/llvmlite/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-vmduII/install-record.txt --single-version-externally-managed --compile --install-headers /home/premsubramaniam/anaconda3/envs/py2/include/python2.7/llvmlite
cwd: /tmp/pip-install-4MrhFR/llvmlite/
Complete output (10 lines):
running install
running build
got version from file /tmp/pip-install-4MrhFR/llvmlite/llvmlite/_version.py {'version': '0.32.1', 'full': 'aa11b129c0b55973067422397821ae6d44fa5e70'}
running build_ext
/home/premsubramaniam/anaconda3/envs/py2/bin/python2.7 /tmp/pip-install-4MrhFR/llvmlite/ffi/build.py
File "/tmp/pip-install-4MrhFR/llvmlite/ffi/build.py", line 122
raise ValueError(msg.format(_ver_check_skip)) from e
^
SyntaxError: invalid syntax
error: command '/home/premsubramaniam/anaconda3/envs/py2/bin/python2.7' failed with exit status 1
----------------------------------------
ERROR: Command errored out with exit status 1: /home/premsubramaniam/anaconda3/envs/py2/bin/python2.7 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-4MrhFR/llvmlite/setup.py'"'"'; __file__='"'"'/tmp/pip-install-4MrhFR/llvmlite/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-vmduII/install-record.txt --single-version-externally-managed --compile --install-headers /home/premsubramaniam/anaconda3/envs/py2/include/python2.7/llvmlite Check the logs for full command output.
(py2) premsubramaniam@pop-os:~$
from altanalyze.
from altanalyze.
from altanalyze.
Related Issues (20)
- Batch effect error HOT 2
- Felis Catus Only AltAnalyze Issue HOT 3
- Error in altanalyze calling getopt.py HOT 1
- A custom database HOT 2
- Coordinate mismatch for extremely small exon regions
- Windows serialization load error - misopy HOT 1
- Kallisto-splice empty BAM files HOT 1
- WikiPathways pathway visualization webservice not working
- Containerization? HOT 1
- TPM or RPKM? HOT 1
- How to enable cell type annotation like previous AltAnalyze Version. HOT 4
- PageRank presents with an error HOT 1
- The viewer in not opening
- Error: No such file or directory: python2.7/site-packages/altanalyze/Config//arrays.txt HOT 13
- Errors and differences in results while running the CLI version for ICGS2 HOT 1
- Predicted sample export failed in GUI HOT 5
- Error running RNASeq analysis with fastq files as input and assigned to groups HOT 2
- The config folder cannot be found.
- Error with sklearn on installing by pip
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from altanalyze.