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Gang Yao's Projects

svision icon svision

Detecting genome structural variants with deep learning in single molecule sequencing

svision-pro icon svision-pro

Identificaion of structural variants with neural network

sweed icon sweed

Likelihood-based Selective Sweep Detection

syngraph icon syngraph

Toolkit for evolutionary analyses of linkage groups

syntenyfinder icon syntenyfinder

SyntenyFinder contains a collection of scripts to easily perform and visualize macrosynteny analysis when provided with the accessions of annotated chromosome-level genome assemblies from NCBI.

tadtool icon tadtool

TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data.

tandemtools icon tandemtools

Tool for assessing/improving assembly quality in extra-long tandem repeats

terl icon terl

Transposable Elements Representation Learner (TERL)

tesseract icon tesseract

Tesseract Open Source OCR Engine (main repository)

tgs-gapcloser icon tgs-gapcloser

A gap-closing software tool that uses long reads to enhance genome assembly.

trax icon trax

Trax — Deep Learning with Clear Code and Speed

tree2gd icon tree2gd

Tree2GD——to identify WGD events

trgt icon trgt

Tandem repeat genotyping and visualization from PacBio HiFi data

trtools icon trtools

Toolkit for genome-wide analysis of tandem repeats

truvari icon truvari

Structural variant toolkit for VCFs

tutorials icon tutorials

Tutorials on phylogenetic and phylogenomic inference

twisst icon twisst

Topology weighting by iterative sampling of sub-trees

ughptools icon ughptools

tools for data analysis under the UnderGraduate Heterosis Project

unimap icon unimap

A experimental fork of minimap2 optimized for assembly-to-reference alignment

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