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Gang Yao's Projects

plantismash icon plantismash

Explore potential Biosynthetic Gene Clusters in plant genomes. This tool is originally sourced from antiSMASH 4.0.

plantpseudogene icon plantpseudogene

PlantPseudogene pipeline was used for pseudogene identification in plant species

plot1cell icon plot1cell

a package for advanced single cell data visualization

pmat icon pmat

An efficient assembly tool for plant mitochondrial genome

polybreedr icon polybreedr

Using genome-wide markers for polyploid breeding

popcogent icon popcogent

Microbial Populations as Clusters Of Gene Transfer

portcullis icon portcullis

Splice junction analysis and filtering from BAM files

ppspcp icon ppspcp

A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline

prank icon prank

Perform multiple sequence alignment with Prank (Loytynoja, 2014)

processcount icon processcount

Prints total gene presences, multi, gains, losses, expansions, contractions per branch/node in the phylogenetic tree resulting from the Count software

pseudofinder icon pseudofinder

Detection of pseudogene candidates in bacterial and archaeal genomes.

pygenometracks icon pygenometracks

python module to plot beautiful and highly customizable genome browser tracks

pygenomeviz icon pygenomeviz

A genome visualization python package for comparative genomics

pyslam icon pyslam

pySLAM contains a monocular Visual Odometry (VO) pipeline in Python. It supports many modern local features based on Deep Learning.

quickmerge icon quickmerge

A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

raccroche icon raccroche

Ancestral flowering plant genomes reconstruction

raven icon raven

De novo genome assembler for long uncorrected reads

rdnatools icon rdnatools

Analysis tools for rDNA seqencing using PacBio

regioners icon regioners

A rust implementation of regioneR for interval overlap permutation testing

relernn icon relernn

Recombination Landscape Estimation using Recurrent Neural Networks

repeatobserverv1 icon repeatobserverv1

An R package to visualize chromosome scale repeat patterns and predict centromere locations.

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