ningshuang-yao Goto Github PK
Name: Gang Yao
Type: User
Bio: Institute of Botany, CAS
Gang Yao's Projects
16s-rdna-dada2-pipeline
**DEFUNCT** dada2-based Nextflow pipeline for multiple amplicon data. See website for up-to-date version
16s-rdna-pipeline
This repository contains an older version of our 16S rDNA diversity analysis pipeline. It uses a combination of bash scripts. To get a more updated version of the pipeline using Nextflow please go here: https://github.com/h3abionet/h3abionet16S/tree/master/workflows-nxf
adaptive_introgression
Adaptive introgression during environmental change can weaken reproductive isolation
adegenet
adegenet: a R package for the multivariate analysis of genetic markers
admixr
An R package for reproducible and automated ADMIXTOOLS analyses
admixtools
Tools test whether admixture occurred and more
adotto
Working space for the GIAB TR benchmarking project
adotto-smk
A snakemake based pipeline to build Adotto TR databases
agora
Algorithm For Gene Order Reconstruction in Ancestors
agotribe
agoTRIBE 在单细胞中检测整个转录组的 microRNA-目标相互作用
ahrd
High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.
allhic
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
allo4d
This pipeline is used to distinguish allotetraploid subgenomes.
alphamissense
Accurately predict which mutations in proteins are likely to cause health conditions
amk_article
Codes for Ancestor reconstruction of monocotyledonous plants
analysisheterosis
Heterosis in Arabidopsis thaliana
ancestry_hmm-s
Ancestry_HMM-S is program designed to infer adaptive introgression from population genomic data
anchorwave
sensitive alignment of genomes with high sequence diversity, extensive structural polymorphism and whole-genome duplication variation
annotationpipeline-evm_based-dclab
Cantù Lab @ UC Davis - Annotation pipeline - EVM based
annotsv
Annotation and Ranking of Structural Variation
antismash
antiSMASH
archaicseeker2.0
Detecting archaic introgression sequences and reconstructing introgression history.
asgan
A tool for analysis of assembly graphs(GFA format)
assembly-stats
Get assembly statistics from FASTA and FASTQ files
assembly_comparison
Code for identifying differences between assemblies
assembly_improvement
Improve the quality of a denovo assembly by scaffolding and gap filling
at_heterosis_rnaseq
DEG&WGCAN analysis
athilafinder
Tool to detect ATHILA LTR retrotransposons in plant genomes
auto-gpt
An experimental open-source attempt to make GPT-4 fully autonomous.
autohic
A novel genome assembly pipeline based on deep learning
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