Related Issues (20)
- nextclade on S gene - recombinant clade ? HOT 1
- ENH: Output Nextclade and dataset version to stderr when running Nextclade CLI
- HCV reference data prep questions HOT 5
- How to get cds sequences using nextclade when analyzing MPXV genomes?
- Parsing tree throws recursion limit error halfway through moderately-sized tree HOT 4
- Lineage XAN* (Nextclade) seems to include too many sequences? HOT 1
- Web: indicate that a download has been initiated
- ENH: Community datasets, loaded from any Github repo with a certain structure HOT 1
- Memory allocator survey (default, jemalloc, mimalloc)
- BUG: Alignment start/end in tsv output seems to be 0-indexed, in contrast to rest of TSV positions HOT 2
- Enable 'lite' version of QC analysis and mutations without a `tree.json` file HOT 3
- Frame shift `ORF7a:empty range` is confusing HOT 3
- Summary of errors in Nextclade HOT 1
- ENH: Allow suppression of duplicates from results HOT 2
- ENH: Output feature table for use during Genbank submission HOT 2
- ENH: Show unaliased Pango lineage in tooltip HOT 5
- ENH: Allow toggling of columns through settings HOT 5
- BUG: When using URL param to run Nextclade web, all sequences are duplicated HOT 2
- ENH: Relative sequence view that shows only shows private mutations HOT 3
- ENH(web): Allow preselection of dataset configuration without immediate running HOT 1
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