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This repository is archived and contains the content used to build the documentation and splash page found in nextstrain.org. This content can now be found here.

License and copyright

Copyright 2014-2018 Trevor Bedford and Richard Neher.

Source code to Nextstrain is made available under the terms of the GNU Affero General Public License (AGPL). Nextstrain is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Affero General Public License for more details.

Nextstrain's Projects

auctor icon auctor

Proof-of-principle implementation of a in-browser Nextstrain Narratives editor

augur icon augur

Pipeline components for real-time phylodynamic analysis

augurlinos icon augurlinos

A collection of modules for molecular epidemiology

auspice icon auspice

Web app for visualizing pathogen evolution

avian-flu icon avian-flu

Nextstrain build for avian influenza viruses

bioconda-recipes icon bioconda-recipes

Fork for maintaining Nextstrain-related recipes and submitting PRs upstream.

chateau icon chateau

Another (awesome) data explorer for RethinkDB

cli icon cli

The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.

conda icon conda

Nextstrain environment for the Conda package manager

dengue icon dengue

Nextstrain build for dengue virus

ebola icon ebola

Nextstrain build for Ebola virus

fasttree icon fasttree

A convenient Makefile for compiling various versions of FastTree

fauna icon fauna

RethinkDB database to support real-time virus analysis

flora icon flora

DB management, APIs, web portals etc.

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