a heuristic-centric DICOM converter

heudiconv is a flexible DICOM converter for organizing brain imaging data into structured directory layouts.

• it allows flexible directory layouts and naming schemes through customizable heuristics implementations
• it only converts the necessary DICOMs, not everything in a directory
• you can keep links to DICOM files in the participant layout
• using dcm2niix under the hood, it's fast
• it can track the provenance of the conversion from DICOM to NIfTI in W3C PROV format
• it provides assistance in converting to BIDS.
• it integrates with DataLad to place converted and original data under git/git-annex version control, while automatically annotating files with sensitive information (e.g., non-defaced anatomicals, etc)

Please use Zenodo record for your specific version of HeuDiConv. We also support gathering all relevant citations via DueCredit.