jooh Goto Github PK

altair

Declarative statistical visualization library for Python

automaticanalysis

Automatic analysis

bindit

Painless bind mounts in docker and other container runners

ciftify

The tools of the Human Connectome Project (HCP) adapted for working with non-HCP datasets

conda

OS-agnostic, system-level binary package manager and ecosystem

conda-recipes

Conda Recipes in support of Psychopy

condarecipes_old

conda recipes for neuroscience

cookiecutter-hypermodern-python

Hypermodern Python Cookiecutter

dcm2bids

Convert DICOM images to BIDS

exportenv

Code for exporting setup to new machines (e.g., brew and conda package lists)

facedistid_analysis

data analysis code for face exemplar model RSA project

fmriprep

fMRIPrep is a robust and easy-to-use pipeline for preprocessing of diverse fMRI data. The transparent workflow dispenses of manual intervention, thereby ensuring the reproducibility of the results.

genericobject_rsa

gwp

Gabor Wavelet Pyramid model for tensorflow

heudiconv

little helper to ease DICOM conversion to ready-to-share folder with heuristics

johansmatlab

Basic utility functions. Required by all other Matlab code

jooh.github.io

website

laminafmrisimulations

Based on PhD work of Huang Pei (HP)

liu_gardner_2018_reanalysis

Use fMRI orientation/contrast dataset to make points about RSA best practices - https://doi.org/10.1523/JNEUROSCI.2453-17.2017

matlab-neuromodeling

Class hierarchy for computational models of representation, including population measurement effects

matlab-plotting

Code for bending Matlab's figures to your will.

matlab-studytools

Tools for running psychology experiments in Matlab.

measurementmodels

Measurement models for representational similarity analysis of functional imaging data

mvpa_simulations

Simulations comparing sensitivity of various MVPA methods (LDC, Euclidean, SVM discriminant and SVM classification)

neuroconda

Conda environment for neuroimaging analysis in python, R, etc

nipype_tutorial

Learn Nipype with these tutorial notebooks - go here to see them online -->

notebook_bids_osd2018

BIDS presentation at Open Science Day, MRC Cognition and Brain Sciences Unit

pilab

Pattern information analysis in Matlab

pilab_aa

pilab batch processing with Automatic Analysis (aa)

py-expcontrol

Easy control of typical experiments in psychology and neuroscience, including stimulus presentation, timing, response collection and logging.