Comments (6)
Hi,
did you try installing pandas separately?
Were you able to install PyWGCNA without any errors?
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Dear Author
I tried install version 1.4.4, 1.5.3, 2.1.0 seperately without any success.
The PyWGCNA installation does not throw any error. Currently, I am trying to install all requirements seperately.
Will update if it works.
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Dear Author
I think the Python version 3.10.13 does not have any issue with installing pandas version 2.1.1. May be a bug with other python version. It would be helpful if compiling the requirements with python version 3.10.13. I have not tried other higher versions but hopefully they will work.
regards
Tanuj
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Hi @tanush84 ,
Sorry, I couldn’t catch the problem here.
were you able to execute pip install PyWGCNA -U
without any error? if yes which version of pandas were installed along with PyWGCNA?
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Hello @nargesr ,
Yes I was able to install the PyWGCNA without any error. It worked by initially created conda environment using python version 3.10.13.
Then I installed pandas version 2.1.0 using conda install -c conda-forge pandas==2.1.0.
Then I install PyWGCNA using Pip
pip install PyWGCNA
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Hi,
and you couldn’t import pyWGCNA and pandas packages in your notebook?
To me, it's more like a problem with your conda environment. I tried to install PyWGCNA using Python 3.9/10/11 and everything was fine
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Related Issues (20)
- how to set figsize HOT 2
- SystemExit: All your genes ended up in one modules! Reconsider your input parameters in order to get more modules. HOT 6
- module_trait_relationships_heatmap HOT 4
- Pandas error HOT 4
- ask for some questions HOT 3
- Image too large. How suppress drawing when using pyWGCNA_obj.preprocess() ? HOT 3
- RecursionError when run pyWGCNA_ct.preprocess() HOT 1
- getDatTraits method might not be suitable for continuous traits. HOT 1
- How adjust parameter in functions??
- Genes and samples switched in goodSamplesGenes HOT 3
- error experienced in tutorial HOT 6
- Doubt on application HOT 1
- What other methods to define metadata colors are allowed, besides color labels ('black', 'pink', etc)? HOT 1
- Seeking help on `order` Parameter Usage and Metadata Color Settings HOT 13
- a issue for findModules() HOT 3
- findModules() inappropriately passes all kwargs to pickSoftThreshold() and cuttreeHybrid() HOT 2
- Re-naming modules HOT 1
- In the module Network Plot, Can we label the node as gene_name instead of gene_id ? HOT 2
- Several errors when performing findModules steps individually HOT 8
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