Comments (4)
kunalkathuria
commented on July 26, 2024
1
Thank you. I am using 1.2.4 now on Python3.8 and will reopen this if necessary. Appreciate the quick responses.
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nargesr
commented on July 26, 2024
Hi,
I don't think so you have the latest version of the PyWGCNA. it should be fixed in the new version.
Also, keep in mind that this function tries to get the table that map gene ensembl id to gene name using biomart website which might be down sometimes.
In the new version of package, you can define which domain you want to use. please look at the API documentation for more info.
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kunalkathuria
commented on July 26, 2024
Oh okay. I cloned the repository perhaps a week or so ago and did a pip install on the directory. Has there been an update subsequently?
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nargesr
commented on July 26, 2024
which version do you have? the latest one is 1.2.4.
The main reason I believe you don't have the latest version is that the default server domain is this but the one shown in your error is this which is not available right now as well.
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Related Issues (20)
- how to set figsize HOT 2
- SystemExit: All your genes ended up in one modules! Reconsider your input parameters in order to get more modules. HOT 6
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- Image too large. How suppress drawing when using pyWGCNA_obj.preprocess() ? HOT 3
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- What other methods to define metadata colors are allowed, besides color labels ('black', 'pink', etc)? HOT 1
- Seeking help on `order` Parameter Usage and Metadata Color Settings HOT 13
- a issue for findModules() HOT 3
- findModules() inappropriately passes all kwargs to pickSoftThreshold() and cuttreeHybrid() HOT 2
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