Comments (3)
nargesr
commented on July 26, 2024
Hi,
did you add your metadata using updateSampleInfo()?
can you tell me what's in the pyWGCNA_TCGA_PAAD.datExpr.obs?
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GERMAN00VP
commented on July 26, 2024
Yes I did update the sample and gene info following all the steps of the quick start tutorial up to the one wich gave me the error. I will upload a photo of the pyWGCNA_TCGA_PAAD.datExpr.obs dataframe and the sample info file so that you can explore the metadata I am using. Thank you for your time and answers.
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nargesr
commented on July 26, 2024
oh, it's probably because you have a dash in your column name like "Cluster_0"
I will try to fix this problem but meanwhile, if you can change your column names to be dash-free, it will probably solve your problem for now
Thank you for catching that! I'll try to see how I can fix that :)
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Related Issues (20)
- how to set figsize HOT 2
- SystemExit: All your genes ended up in one modules! Reconsider your input parameters in order to get more modules. HOT 6
- module_trait_relationships_heatmap HOT 4
- Pandas error HOT 4
- Visualization error HOT 6
- Tutorial data
- gene name question HOT 1
- analyseWGCNA subplot error HOT 11
- How adjust parameter in functions??
- Genes and samples switched in goodSamplesGenes HOT 3
- error experienced in tutorial HOT 6
- Doubt on application HOT 1
- What other methods to define metadata colors are allowed, besides color labels ('black', 'pink', etc)? HOT 1
- Seeking help on `order` Parameter Usage and Metadata Color Settings HOT 13
- a issue for findModules() HOT 3
- findModules() inappropriately passes all kwargs to pickSoftThreshold() and cuttreeHybrid() HOT 2
- Re-naming modules HOT 1
- In the module Network Plot, Can we label the node as gene_name instead of gene_id ? HOT 2
- Several errors when performing findModules steps individually HOT 8
- 2
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