Could PyWGCNA draw Hierarchical cluster tree? about pywgcna HOT 1 CLOSED

Hi,

Thank you :)

There is no function to do that but you can plot it by yourself since all the information is already calculated and saved in the object.
The module color is saved as a column moduleColors in the PyWGCNA.datExpr.var along with other gene information
The information you need for the dendrogram is saved in the PyWGCNA.geneTree. you can use scipy.cluster.hierarchy.dendrogram function to plot the dendrogram

for more information please look at the issue #6

from pywgcna.