Comments (3)
Hi, lmigueel
Try the following steps to create a virtual environment for conda.
conda create -n your_env python=3.9 scipy
conda activate your_env
After activating the env, Git cloning the PyWGCNA repository, going to the PyWGCNA directory.
Modify comparison.py as shown in the following comment.
#18 (comment)
Then, run.
python setup.py install
So far, as far as I have tried, enrichment analysis is working well with gseapy version 0.10.5.
pip unistall gseapy
pip install gseapy=0.10.5
tyaoi
from pywgcna.
Hi,
For now, please downgrade your numpy package.
Meanwhile, I'm looking to find a replacement for statsmodels package or to see if they're going to update their package
from pywgcna.
Hi,
There is a new version of statsmodels that is compatible with the new version of NumPy.
I updated the requirements which hopefully fixed this issue.
Please do not hesitate to reopen this issue if you get the same error!
from pywgcna.
Related Issues (20)
- how to set figsize HOT 2
- SystemExit: All your genes ended up in one modules! Reconsider your input parameters in order to get more modules. HOT 6
- module_trait_relationships_heatmap HOT 4
- Pandas error HOT 4
- ask for some questions HOT 3
- Image too large. How suppress drawing when using pyWGCNA_obj.preprocess() ? HOT 3
- RecursionError when run pyWGCNA_ct.preprocess() HOT 1
- getDatTraits method might not be suitable for continuous traits. HOT 1
- How adjust parameter in functions??
- Genes and samples switched in goodSamplesGenes HOT 3
- error experienced in tutorial HOT 6
- Doubt on application HOT 1
- What other methods to define metadata colors are allowed, besides color labels ('black', 'pink', etc)? HOT 1
- Seeking help on `order` Parameter Usage and Metadata Color Settings HOT 13
- a issue for findModules() HOT 3
- findModules() inappropriately passes all kwargs to pickSoftThreshold() and cuttreeHybrid() HOT 2
- Re-naming modules HOT 1
- In the module Network Plot, Can we label the node as gene_name instead of gene_id ? HOT 2
- Several errors when performing findModules steps individually HOT 8
- 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from pywgcna.