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BEDOPS v2.4.2 is a suite of tools to address common questions raised in genomic studies — mostly with regard to overlap and proximity relationships between data sets. It aims to be scalable and flexible, facilitating the efficient and accurate analysis and management of large-scale genomic data.

The overview section of the BEDOPS v2.4.2 documentation summarizes the toolkit, functionality and performance enhancements. The reference table offers documentation for all applications and scripts.

x86-64 (64-bit) binaries i386 (32-bit) binaries Installation instructions	Intel (32-/64-bit) installer Installation instructions	Source code (tar.gz) Source code (zip) Compilation instructions

Complete documentation for BEDOPS v2.4.2 tools is available at: https://bedops.readthedocs.org/

If you use BEDOPS v2.4.2 in your research, please cite the following manuscript:

Shane Neph, M. Scott Kuehn, Alex P. Reynolds, et al.
[BEDOPS: high-performance genomic feature operations
Bioinformatics (2012) 28 (14): 1919-1920.] (http://bioinformatics.oxfordjournals.org/content/28/14/1919.abstract)

Copyright (C) 2011, 2012, 2013, 2014 Shane J. Neph, M. Scott Kuehn and Alex P. Reynolds

Source code, documentation and media assets released under GNU Public License Version 2 (GPL v2).