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I work in the Meuleman lab at the Altius Institute to help simplify and enhance analysis of, presentation of, and interaction with complex and large-scale datasets. The following repositories are tools and code snippets I've made or contributed to, along the way. Share and enjoy!

Alex Reynolds's Projects

and-hearts icon and-hearts

Animated 'like' button and notification with React Hooks, CSS, and Javascript.

annotations icon annotations

Expressjs + Redis-backed annotations web service with autocomplete

automata icon automata

Automata is a small library for generating one-dimensional, two-color cellular automata

bam-js icon bam-js

Parse BAM and BAM index files in javascript for node and the browser

byte-store icon byte-store

Generate and explore upper triangular and square matrices of 1-byte values

clodius icon clodius

Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.

colormaker icon colormaker

Starting with a seed color and desired number of colors, returns an array of colors

convert2bed icon convert2bed

Convert common binary and text genomic formats to BED

cull-exemplars icon cull-exemplars

Filter lower-scoring, neighboring genomic intervals within a specified distance

disjoint-windows icon disjoint-windows

Build a list of high-scoring, non-overlapping intervals using sampling or scheduling methods

epilogos icon epilogos

Methods for summarizing and visualizing multi-biosample functional genomic annotations

fastqz icon fastqz

Compression library for FastQ files, code from http://mattmahoney.net/dc/fastqz/

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