meghalithic / magnifica Goto Github PK
View Code? Open in Web Editor NEWRepository for the analysis of Steginoporella magnifica images and traits
Repository for the analysis of Steginoporella magnifica images and traits
There are 19 images with the same box id. We may want to rethink how we label the zooids.
Orr et al. 2021:
BLEED 1323
Orr et al. 2022:
BLEED 242
BLEED 80
BLEED 244
BLEED 225
BLEED 686
check to see if they have a formation in the metadata file or ask Mali
The only difference was that the lab computer has the image "MHR.713.BLEED.582.tif". I am unsure what this image is or of? @klvoje any ideas what the prefix MHR is?
P = triangle = 17
G = square = 15
Global g = diamond
reconcile differences in naming and abbreviation
DATA WRANGLING:
ANALYSES:
Seems most traits have some sort of bimodality in distribution. As an example, see zooid height:
Bimodality is only seen in three formations: Waipurpu, NKBS, Upper Kai-Iwi
Possibly due to image quality? Will need to see boxes and output images that relate to output_21Apr2023_Stegniator.csv.
It seems the first mode ends around 300 pixels, which encompass 95 images (out of 891 images total).
based on #2 , I will change the linear traits image and list on the readme file
modern_metadata: connecting site information with specimen ID. This is now updated in the metadata file for Steginoporella SEMS
modern_locality_metadata: aggregation of metadata for sites used in this study
KLV_metadata: collecting metadata from the images provided by KLV
BLEED_metadata: subset of BLEED image metadata for images used in this study from the BLEED DB
NOTE: NIWA file-name sequence is: Taxon name, NIWA registration number, station number, and image number. A, B, etc, refer to different colonies (or fragments of colonies) of the same species from the same station.
only 10 images removed
From discussion with Carolann:
what does F, S, or P mean?
These come from the "JPG" shared dropbox folder.
There is a discrepancy in two images. One of which is image 313_1.jpg, which AP said to ignore.
found differences in image names between the list of images and the image metadata file, "Imaged Steginoporella magnifica specimens.csv".
Main differences:
BLEED / EPA images:
NIWA images:
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.