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biological-spatial-ontology

An ontology for respresenting spatial concepts, anatomical axes, gradients, regions, planes, sides, and surfaces

bioregistry

📮 An integrative registry of biological databases, ontologies, and nomenclatures.

biosystems-analytics-2020

434/534 Biosystems Analytics course at the University of Arizona

bryo

Bryozoan Attribute Ontology

bryo_metadata

scripts and datafiles used to reconcile stegino metadata

deepbryo_micro

A web app for AI-assisted segmentation of cheilostome bryozoan colonies

docker-stacks

Ready-to-run Docker images containing Jupyter applications

docker_demo

docker_practice

drake_demo

foss-2019

FOSS website

foss2020_test

practice repo

lit-bryo

magnifica

Repository for the analysis of Steginoporella magnifica images and traits

megbalk.github.io

microporella

extraction of traits from morphological modules of Microporella species

ml-morph_micro

Machine-learning-based morphometrics

neotomasummary

A repository to generate an overal summary of the Neotoma DB from a set of SQL and API calls.

obofoundry.github.io

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

open-traits-network.github.io

Open Traits Network Registry and Website

paleobiodb

R interface to the Paleobiology Database

pema_ssd

reuse

code that is used often

small_zooids

investigation to colonies of Steginoporella magnifica with unusually small zooids

ssd_rodents

Examining sexual size dimorphism among rodents

steginator-magnifica

copy of aporto Steginator for use on the magnifica project

webpic

Source code for the web application, webpic, and its online generator