• MHR.9608 is identified as M. agonistes in the metadata, but as M. speculum by EDM on a different project
• MHR.10797 is identified as M. agonistes in the metadata, but as M. discors by EDM on a different project
• cannot find image for MHR.9210
• cannot find metadata for MHR.10575

What are F, P, and S?

AP says F is for Flat
Mali says F is for Fragment
Mali thinks P is for Piece

BLEED / EPA images:

• 30x: 0.606 pixels per µm
• 35x: 0.705 pixels per µm
• 40x: 0.825 pixels per µm
• 80x: 1.6179 pixels per µm

NIWA images:

• 50x: .404 pixels per µm
• 30x: .242 pixels per µm
• 60x: .484 pixels per µm

see issue 13

NL-# sites: in "all for you"
TS-# sites: in "Copy of Smith Achilleos Gordon SD Tbl 1"
Fossil sites: in "All.NZ.Samples_MAB_19.02.2024" (most recent version on Dropbox)
KAH cruises: in "KAH1705 Stations for Lee Hsiang (1)" from EDM or found using NIWA website search
Modern samples from DNA: in "Vouchers" from Mali or the BLEED database on the lab pc
(Note: the BLEED database on lab pc includes more than just the DNA-extracted specimens)

TQI sites: ??

e.g., 004_CV and 004_CC

• Change file names highlighted blue in “metadata_17Apr2023.xlsx”
  • change file name for 1266 to 35 mag
  • change 1200 modern name
  • update "Steginoporella_magnifica_SEM" file too
  • make new copies of images and txt files that changed to ML computer and external hard drive
• add in the following formation information
  • Pukenni Limestone
  • Hautawa Shellbed
  • Lower Maxwell Formation
  • Upper Westmere Shellbed
  • Lower Kai-iwi
  • Forest Hill Limestone
  • Setana Formation
  • Castlepoint Formation
  • White Rock Limestone
  • Clifden Limestone
  • Whanganui (core)
• Fix 1750 to be 1705
• figure out what "big zooids" mean for 1011CV, 037i, and 818CC
• find missing images 717iCV and image 005CC, both of which are in the imaging file
• fix and check duplicate names
  • 001CC (one from KAH1705, one from NKBS)
  • 005CV (one from KAH1705, one from NKBS)
  • 531CV (one imaged by MHR, one by Sara)
  • 650CV (both imaged by MHR on different dates)
  • 657iCC (one imaged by MHR, one by Sara)
• figure out why two specimens have same number 570CC

• where is metadata for LHL and pdt images?
• what do columns headers and values mean?
• what do the letters mean after the numbers in BLEED_code?
• BLEED 244 is labeled as Microporella discors but it is Steginoporella magnifica
• BLEED 10 says it was originally BLEED 20, but BLEED 20 is an entirely different species
• 334 is in the BLEED database twice
• Could we help get a species ID for BLEED 71 and 77
• 2119 and 2120 have same SEM information
• SEM info for BLEED 025 are not of M. agonistes

• figure out where images for 116043 are
• figure out where images for 10575 are
• ask Mali about discrepencies in voucher spread
• MHR.003.BLEED.256 and MHR.004.BLEED.256 are labeled MHR.003.BLEED.215 in txt file
• MRH.005.BLEED.121 and MRH.006.BLEED.121 labeled with BLEED 215
• MRH.007.BLEED.389 and MRH.008.BLEED.389 are labeled with BLEED 215
• MRH.009.BLEED.434 and MRH.010.BLEED.434 are labeled with BLEED 215
• MHR.10319.BLEED.1989 (10319-22) had tif in the name so relabeled
  • need to relabel main images as well
• MHR.1745.BLEED.849 and MHR.1746.BLEED.849 are labeled with BLEED.949
• MHR.2855 and 56 had tif in name files; fixed
  • need to relabel main images as well
• deleted copy.tif
  • need to relabel main images as well
• MHR.2969.BLEED.1367 and MHR.2970.BLEED.1367 had an extra “1” at end, so deleted it
  • need to relabel main images as well
• MHR.2995.BLEED.1436 and MHR.2996.BLEED.1436 had tif at end; fixed
  • need to relabel main images as well
• MHR.3069 was labeled as 3068; fixed
  • need to relabel main images as well
• MHR.4415.BLEED.1715 and MHR.4416.BLEED.1715 had tif at the end; fixed
  • need to relabel main images as well
• no txt file for MHR.6027.BLEED.181 or MHR.6028.BLEED.181
• deleted disregard files
  • need to relabel main images as well
• no images for the following edm: BLEED 1815, 1748, 1722, 1804,
• MHR.10453.BLEED.2061 - is it 2053 or 2061? (through 61)
• MHR.1047 is assigned to BLEED.682 and 697
• MHR.1503 and MHR.1504 are assigned to BLEED 1055 and 1067, i think these should be 1506 and 1507
• MHR.1747 assigned to both BLEED 849 and 949
• MHR 1767 assigned to both BLEED 836 and 838
• MHR.2173 and MHR.2174 are BLEED 1066 in voucher and BLEED 1166 in image name
• MHR.2223 and MHR.2224 given to both BLEED 212 and 799
• MHR.234 is BLEED 441 in voucher and labeled 444 in image name
• MHR.314 is BLEED.480 in voucher but BLEED.449 in image name
• MHR.543 and MHR.544 BLEED 101 in voucher but BLEED 093 in image name
• do not have MHR.6813.BLEED.1623 in voucher or 6814-9
• MHR.7662 is given to both BLEED 1791 in voucher and BLEED 1848 as image name
• MHR.7677 and MHR.7678 are BLEED 1892 in voucher but BLEED 1930 in image name
• MHR.7679 and MHR:7680 are to BLEED 1879 in voucher but BLEED 1807 in image name
• MHR.7681 is to both BLEED 1791 and BLEED 1860
• MHR.7683 and MHR.7684 are to BLEED 1860 in voucher, but BLEED 1904 in images
• BLEED 1904 has images 7683-7690 in image name
• in vouchers, MHR.7685 and MHR.7686 are to BLEED 1427; assigned to both 1427 and 1904 in image name
• MHR.7687 and MHR.7688 are to BLEED 1877 in vouchers; assigned to both BLEED 1877 and 1904 in image name
• MHR.7689 and MHR.7690 are to BLEED 1704; assigned to both BLEED 1704 and 1904 in image name
• BLEED 1910 has MHR.7691-6 in image name
• MHR.7691 and MHR.7692 are to BLEED 1704 in vouchers; assigned to both BLEED 1704 and 1910 in image name
• MHR.7693 and MHR.7694 are BLEED 1879 in vouchers; assigned to both BLEED 1879 and 1910 in image name
• MHR.7695 and MHR.7696 are BLEED 1678 in vouchers; assigned to both BLEED 1910 and 1678 in image name
• BLEED 1905 has MHR.7697-MHR.7704 in image names
• MHR.7697-MHR.7700 are BLEED 1678 in vouchers; assigned to both BLEED 1905 and 1678 in image name
• MHR.7701-MHR.7704 are BLEED 421 in vouchers; assigned to both BLEED 421 and 1905 in image name
• no image or txt file for:
  • MHR 147
  • BLEED 313
  • MHR 1944
  • BLEED1066 MHR 2173, 2174
  • MHR 2365
  • MHR7677, 7678
  • MHR 7679, 7680
• no BLEED 2061
• missing images for BLEED 116
• no tif for MHR.3145
• do not know what the images MHR.12883-MHR.12885 and MHR.116043 in microporella are of

from issue 11

• make new metadata file for imaging specimens
• add column of suspected species ID
• add notes to protocol
• compare .tif info to information inside of associated .txt file for Stegino images
• compare file list of Stegino image to file list of images from lab computer
• make notes on BTKE image
• make note on 313_1 image
• match “none” folder with formation based on specimen number
• check magnification if that is creating first mode
• check list of images on main computer with images on hard drive
• create labeling system
• create metadata file sheet
• read in metadata from .txt files- [ ] figure out F, P, S
• Go back and check CV/CC, P, S images
• check Steginoporella boxes
• update metadata file with box information
• compare corrected Stegino images to image metadata
• add locality data
• relabel image data and make folder of data on the lab computer

see issue 5