kl_me2 environment
/lustre/home/umjzhh-1/kl_me2/codes/pymatgen/pymatgen/io/vasp/sets_deprecated.py:460: DeprecationWarning: __init__ is deprecated
All vasp input sets have been replaced by equivalents pymatgen.io.sets. Will be removed in pmg 4.0.
return DictVaspInputSet(name, loadfn(filename), **kwargs)
Traceback (most recent call last):
File "/lustre/home/umjzhh-1/kl_me2/virtenv_kl_me2/bin/lpad", line 6, in <module>
exec(compile(open(__file__).read(), __file__, 'exec'))
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/scripts/lpad", line 6, in <module>
lpad()
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/scripts/lpad_run.py", line 863, in lpad
args.func(args)
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/scripts/lpad_run.py", line 208, in get_fws
fw = lp.get_fw_by_id(id)
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/core/launchpad.py", line 316, in get_fw_by_id
return Firework.from_dict(self.get_fw_dict_by_id(fw_id))
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/utilities/fw_serializers.py", line 148, in _decorator
m_dict = func(self, *new_args, **kwargs)
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/core/firework.py", line 325, in from_dict
state, created_on, fw_id, updated_on=updated_on)
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/core/firework.py", line 218, in __init__
tasks] # put tasks in a special location of the spec
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/utilities/fw_serializers.py", line 161, in _decorator
m_dict = func(self, *args, **kwargs)
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/utilities/fw_serializers.py", line 133, in _decorator
m_dict = recursive_dict(m_dict)
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/utilities/fw_serializers.py", line 76, in recursive_dict
return {recursive_dict(k, preserve_unicode): recursive_dict(v, preserve_unicode) for k, v in obj.items()}
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/utilities/fw_serializers.py", line 76, in <dictcomp>
return {recursive_dict(k, preserve_unicode): recursive_dict(v, preserve_unicode) for k, v in obj.items()}
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/utilities/fw_serializers.py", line 79, in recursive_dict
return [recursive_dict(v, preserve_unicode) for v in obj]
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/utilities/fw_serializers.py", line 70, in recursive_dict
return recursive_dict(obj.as_dict(), preserve_unicode)
File "/lustre/home/umjzhh-1/kl_me2/codes/custodian/custodian/vasp/jobs.py", line 347, in as_dict
default_vasp_input_set=self.default_vis.as_dict(),
AttributeError: 'dict' object has no attribute 'as_dict'
l_me2 environment
Are you sure? This will modify 40 entries. (Y/N)Y
/lustre/home/umjzhh-1/kl_me2/codes/pymatgen/pymatgen/io/vasp/sets_deprecated.py:460: DeprecationWarning: __init__ is deprecated
All vasp input sets have been replaced by equivalents pymatgen.io.sets. Will be removed in pmg 4.0.
return DictVaspInputSet(name, loadfn(filename), **kwargs)
2016-06-03 20:31:30,242 DEBUG Processed fw_id: ...
...
2016-06-03 20:31:31,194 INFO Also rerunning duplicate fw_id: 11131
2016-06-03 20:31:31,233 DEBUG Processed fw_id: 3940
2016-06-03 20:31:31,276 INFO Also rerunning duplicate fw_id: 11110
2016-06-03 20:31:31,323 DEBUG Processed fw_id: 3947
2016-06-03 20:31:31,375 INFO Also rerunning duplicate fw_id: 11103
2016-06-03 20:31:31,416 DEBUG Processed fw_id: 3968
2016-06-03 20:31:30,242 DEBUG Processed fw_id: ...
Traceback (most recent call last):
File "/lustre/home/umjzhh-1/kl_me2/virtenv_kl_me2/bin/lpad", line 6, in <module>
exec(compile(open(__file__).read(), __file__, 'exec'))
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/scripts/lpad", line 6, in <module>
lpad()
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/scripts/lpad_run.py", line 863, in lpad
args.func(args)
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/scripts/lpad_run.py", line 387, in rerun_fws
lp.rerun_fw(int(f))
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/core/launchpad.py", line 966, in rerun_fw
updated_ids = wf.rerun_fw(fw_id)
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/core/firework.py", line 836, in rerun_fw
self.rerun_fw(child_id, updated_ids))
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/core/firework.py", line 830, in rerun_fw
m_fw._rerun()
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/core/launchpad.py", line 1219, in _rerun
self.full_fw._rerun()
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/core/launchpad.py", line 1309, in full_fw
self._get_launch_data(launch_field)
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/core/launchpad.py", line 1320, in _get_launch_data
fw = self.partial_fw # assure stage 1
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/core/launchpad.py", line 1302, in partial_fw
self._fw = Firework.from_dict(data)
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/utilities/fw_serializers.py", line 148, in _decorator
m_dict = func(self, *new_args, **kwargs)
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/core/firework.py", line 325, in from_dict
state, created_on, fw_id, updated_on=updated_on)
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/core/firework.py", line 218, in __init__
tasks] # put tasks in a special location of the spec
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/utilities/fw_serializers.py", line 161, in _decorator
m_dict = func(self, *args, **kwargs)
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/utilities/fw_serializers.py", line 133, in _decorator
m_dict = recursive_dict(m_dict)
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/utilities/fw_serializers.py", line 76, in recursive_dict
return {recursive_dict(k, preserve_unicode): recursive_dict(v, preserve_unicode) for k, v in obj.items()}
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/utilities/fw_serializers.py", line 76, in <dictcomp>
return {recursive_dict(k, preserve_unicode): recursive_dict(v, preserve_unicode) for k, v in obj.items()}
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/utilities/fw_serializers.py", line 79, in recursive_dict
return [recursive_dict(v, preserve_unicode) for v in obj]
File "/lustre/home/umjzhh-1/kl_me2/codes/fireworks/fireworks/utilities/fw_serializers.py", line 70, in recursive_dict
return recursive_dict(obj.as_dict(), preserve_unicode)
File "/lustre/home/umjzhh-1/kl_me2/codes/custodian/custodian/vasp/jobs.py", line 347, in as_dict
default_vasp_input_set=self.default_vis.as_dict(),
AttributeError: 'dict' object has no attribute 'as_dict'