lorentzben Goto Github PK

16s_report_gitbook

Attempt to convert a rnotebook file into a gitbook to see if render size can be reduced

ampliseqvis

ancient_chicken

a repository to hold code and notes from the ancient chicken project

animal-movement-project

automate_16_nf

Nexflow Implementation of my automate 16s pipeline

automate_16s

The goal of this project is to automate a 16s rRNA analysis to make it more accessible

cheatsheets

A place for tips and tricks I have found, maybe they can be helpful

cipher

compbio_demo

Demonstration of pull requests, distributed workflows, etc.

datamining2020

This is a repository created for my homework submissions for Spring of 2020 at Loyola University Chicago

fasta_metadata_parser

fastqc_for_me

A script to call fastqc as well generate human and machine readable output

gg-catalog

gg-catalog-nf

A Nextflow Implementation for Cleaning reads and Calculating Relative Abundance

grade-calculator

This is a grade calculator. It is set up with the ability to calculate weighted grades

gtool

Small utility to quickly find size, GC content of a fasta, and integrity fasta gene catelogue.

host-microbe-interaction-protein

illumina_unpack

A tool for Unpacking Illumina nested fastq files

jackwood_blast_parser

Script to Parse Blast type outputs to verify genome assemblies

labnotebook

A repo to store code for a publically hosted lab notebook

labnotebook_template

:notebook: Source code and version history for my online lab notebook

lorentz-time-series

An R package to house functions that are useful to process time series data

lorentzben.github.io

lts

The goal of LTS is to package and extend functions useful for time-series datasets.

metagenome_pipeline

A pipeline developed to help analyse shotgun metagenomic studies

miniproject

Comp Bio 383 Mini Project Python Wrapper

mum

A Python script designed to assist in 16s analysis using the tool Mothur

myproject

parse_table

pokemon_of_the_day