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License: Other
C# implementation of the Goslin framework
License: Other
@dominik-kopczynski @nilshoffmann
Why does LipidParser().parse() take on average 0.3 seconds to parse simple strings like"TG 18:1_16:1_18:2"? 0.3 seconds is the average without profiling or debug mode.
Code is simple:
var parser = new LipidParser();
var parsed = parser.parse("TG 18:1_16:1_18:2");
Line-by-line profiling shows thousands of recursive calls to collect_backwards. What's going on?
I would like to incorporate csgoslin into our lipidomics software, but if parsing 300 Identified lipids takes 100 seconds then this is likely untenable.
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.github/workflows/dotnet.yml
actions/checkout v2
actions/setup-dotnet v1
data/goslin/build.gradle
org.antlr:antlr4 4.9.2
csgoslin.Tests/csgoslin.Tests.csproj
coverlet.collector 3.1.1
xunit.assert 2.4.1
xunit 2.4.1
xunit.runner.console 2.4.1
Microsoft.NETFramework.ReferenceAssemblies 1.0.2
xunit.runner.visualstudio 2.4.3
Microsoft.NET.Test.Sdk 16.11.0
csgoslin/csgoslin.csproj
csgoslin/writeLipidEnums.csproj
writeGrammarHeader/writeGrammarHeader.csproj
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