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LIFS Tools Overview

awesome-lipidomics

A collection of awesome lipidomics tools and resources

bioconda-recipes

Conda recipes for the bioconda channel.

cppgoslin

C++ implementation of parsers for the Grammars on succinct lipid nomenclature (Goslin).

csgoslin

C# implementation of the Goslin framework

empirical-lipid-ms-score

flipr

Fragment-based Lipid Relative Intensity Prediction

flipr-trainer

Data extraction and model training harness for flipr

flipr-transition-extractor

MSDK-based tool to extract MS2 transition data for CE series from mzML files

goslin

Goslin is the Grammar on succinct lipid nomenclature.

goslin-sparql

A SPARQL endpoint for lipid shorthand nomenclature

goslin-webapp

Web application and REST Api for parsers for the Grammars on succinct lipid nomenclature (Goslin).

ils-ceramide-ring-trial

jgoslin

Java implementation of the latest shorthand nomenclature.

jgoslin-v1.x

jmztab-m

Reference implementation for mzTab-M 2.0 for metabolomics

jmztab-m-webapp

The mzTab Validator webapplication

keycloak-docker-role-mapper

Keycloak mapper implementation to support role-based authentication via Keycloak, mapping to docker registries push and pull scopes.

lipidcreator

LipidCreator is a powerful stand alone kick-off tool for targeted lipidomics and a plugin for Skyline. It provides convenient tools to generate transition lists for labeled and unlabeled lipids.

lipiddatatables

lipidhome-web

The web interface of LipidHome. Automatically exported from code.google.com/p/lipidhome.

lipidomics-checklist

Lipidomics Checklist

lipidspace

LipidSpace

lipidxplorer

mztabm-editor

pygoslin

Python implementation of parsers for the Grammars on succinct lipid nomenclature (Goslin).

pymztab-m

The Python3 language bindings for mzTab-M

rgoslin

Rgoslin Repository for Bioconductor submission

rgoslin-old

R implementation of parsers for the Grammars on succinct lipid nomenclature (Goslin).

rmztab-m

The R-language bindings for mzTab-M