๐ฆBEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models
License: MIT License
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๐ A postdoc at Massachusetts General Hospital and Broad Institute
๐ง๐ปโ๐ป A computational biologist working with high-throughput sequencing data
๐งซ Study the gut microbiome and its interactions with the host
โ Interested in the uncharacterized functional space of the gut microbes
โ Interested in the spatial-temporal dynamics of the gut microbes
hi here is my workflow
fungi <- read.table("Normal.txt", sep="\t", row.names=1, header=T)
res_2 <- func.EM(m, ncpu=4)
and following is the error
############# Run for iteration 1: #############
E-step: estimating scaled parameters...
Error in { : task 10 failed - "invalid 'times' argument"
attached i s the input file
please help me solve this
Hi,
I wonder if it would be possible to analyse cross domain interactions like with Spiec-easi? In that case, input would be 2 tables.
Thanks,
Nico
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