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awesome-bioinformatics

A curated list of awesome Bioinformatics libraries and software.

awesome-microbes

List of computational resources for analyzing microbial sequencing data.

awesome-r-dataviz

Curated resources about Data Visualization, Drawing & Publishing in R

bacteria-archaea-traits

A synthesis of bacterial and archaeal phenotypic trait data

beautiful-visualization-with-r

《R语言数据可视化之美》配套代码

beem-static

📦BEEM-Static: An R package for inferring microbial interactions based on Lotka-Volterra models

beta_nti

NTI learning

blockstructure

Code accompanying the manuscript "Modularity and stability of ecological communities", by Jacopo Grilli & Stefano Allesina

bookdown

Authoring Books and Technical Documents with R Markdown

broom

Convert statistical analysis objects from R into tidy format

cohesion_networks

Scripts for calculating microbial sample cohesion using association networks

community-occupancy-model-amphibians-atlantic-forest-streams

complexheatmap

Make Complex Heatmaps

conet

PluMA plugin that uses CoNet (Faust et al, 2012) to infer an original dataset from an interaction matrix

crazy-python

疯狂Python讲义

cross-validation-glm-vs-lmer-vs-brms

Repeated k-fold cross validation to evaluate glm (linear) versus lmer (mixed) versus brms (bayesian) models

dataeditr

An Interactive R Package for Viewing, Entering Filtering and Editing Data

dive-into-dl-tensorflow2.0

本项目将《动手学深度学习》(Dive into Deep Learning)原书中的MXNet实现改为TensorFlow 2.0实现，项目已得到李沐老师的同意

easyaovwlxplot

easymetagenome

Easy Metagenome Pipeline 2019 (1.0)

easymicrobiome

R

easystats

:milky_way: The R easystats-project

ecologicalstabilitypropertiescomputation

enmsdm

Faster, better, smarter ecological niche modeling and species distribution modeling

feast

Fast expectation maximization for microbial source tracking

fixest

Fixed-effects estimations

funguild

FUNGuild: parsing OTUs into functional guilds

gdm

R package for Generalized Dissimilarity Modeling

gganimate

A Grammar of Animated Graphics

ggclusternet

Microbial ecological network visualization clustering