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mustache - Tool box to identify mobile element insertions from short-read sequencing data

The command-line tool mustache identifies large insertions and genotypes from short-read sequencing data.

It is designed to work with haploid genomes, and has been tested extensively on bacteria.

It can identify mobile genetic elements and their sites of insertion using a de novo approach.

Follow the links below to learn more.

Table of Contents

  1. How it works
  2. Install or update software
  3. Step-by-step tutorial
  4. Detailed user manual

Preprint

Durrant, Matthew, Michelle M. Li, Benjamin Siranosian, and Ami S. Bhatt. 2019. "Mobile Genetic Element Insertions Drive Antibiotic Resistance across Pathogens. bioRxiv.

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